fast.genomicscompare 6,575 genera of bacteria & archaea

 

Bacteroides_F pectinophilus ATCC 43243

Genome identifier: GCA_000155855.1

NCBI assembly name: ASM15585v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Bacteroides_F, Bacteroides_F pectinophilus

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, [Bacteroides] pectinophilus

Scaffolds: 9

Genes: 3,296 Protein-coding: 3,246 RNAs: 50 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
DS996920.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_0 genomic scaffold, whole genome shotgun sequence 29,332
DS996921.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_1 genomic scaffold, whole genome shotgun sequence 2,528,381
DS996922.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_2 genomic scaffold, whole genome shotgun sequence 112,627
DS996923.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_3 genomic scaffold, whole genome shotgun sequence 268,709
DS996924.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_4 genomic scaffold, whole genome shotgun sequence 3,438
DS996925.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_5 genomic scaffold, whole genome shotgun sequence 56,774
DS996926.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_6 genomic scaffold, whole genome shotgun sequence 27,775
DS996927.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_7 genomic scaffold, whole genome shotgun sequence 694
DS996928.1 [Bacteroides] pectinophilus ATCC 43243 Scfld_02_8 genomic scaffold, whole genome shotgun sequence 596

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory