fast.genomicscompare 6,575 genera of bacteria & archaea

 

HTCC2150 sp000169395 HTCC2150

Genome identifier: GCA_000169395.1

NCBI assembly name: ASM16939v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, HTCC2150, HTCC2150 sp000169395

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae

Scaffolds: 25

Genes: 3,703 Protein-coding: 3,667 RNAs: 36 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
AAXZ01000001.1 Rhodobacteraceae bacterium HTCC2150 1101159006523, whole genome shotgun sequence 985,525
AAXZ01000002.1 Rhodobacteraceae bacterium HTCC2150 1101159006518, whole genome shotgun sequence 983,359
AAXZ01000003.1 Rhodobacteraceae bacterium HTCC2150 1101159006516, whole genome shotgun sequence 320,830
AAXZ01000004.1 Rhodobacteraceae bacterium HTCC2150 1101159006526, whole genome shotgun sequence 200,362
AAXZ01000005.1 Rhodobacteraceae bacterium HTCC2150 1101159006517, whole genome shotgun sequence 152,516
AAXZ01000006.1 Rhodobacteraceae bacterium HTCC2150 1101159006527, whole genome shotgun sequence 116,478
AAXZ01000007.1 Rhodobacteraceae bacterium HTCC2150 1101159006515, whole genome shotgun sequence 107,835
AAXZ01000008.1 Rhodobacteraceae bacterium HTCC2150 1101159006522, whole genome shotgun sequence 103,168
AAXZ01000009.1 Rhodobacteraceae bacterium HTCC2150 1101159006520, whole genome shotgun sequence 98,953
AAXZ01000010.1 Rhodobacteraceae bacterium HTCC2150 1101159006525, whole genome shotgun sequence 92,008
AAXZ01000011.1 Rhodobacteraceae bacterium HTCC2150 1101159006521, whole genome shotgun sequence 77,416
AAXZ01000012.1 Rhodobacteraceae bacterium HTCC2150 1101159006524, whole genome shotgun sequence 76,157
AAXZ01000013.1 Rhodobacteraceae bacterium HTCC2150 1101159006514, whole genome shotgun sequence 66,491
AAXZ01000014.1 Rhodobacteraceae bacterium HTCC2150 1101159006488, whole genome shotgun sequence 54,094
AAXZ01000015.1 Rhodobacteraceae bacterium HTCC2150 1101159006519, whole genome shotgun sequence 41,178
AAXZ01000016.1 Rhodobacteraceae bacterium HTCC2150 1101159006489, whole genome shotgun sequence 30,243
AAXZ01000017.1 Rhodobacteraceae bacterium HTCC2150 1101159006512, whole genome shotgun sequence 16,654
AAXZ01000018.1 Rhodobacteraceae bacterium HTCC2150 1101159006503, whole genome shotgun sequence 14,675
AAXZ01000019.1 Rhodobacteraceae bacterium HTCC2150 1101159006511, whole genome shotgun sequence 13,161
AAXZ01000020.1 Rhodobacteraceae bacterium HTCC2150 1101159006513, whole genome shotgun sequence 11,073
AAXZ01000021.1 Rhodobacteraceae bacterium HTCC2150 1101159006508, whole genome shotgun sequence 10,222
AAXZ01000022.1 Rhodobacteraceae bacterium HTCC2150 1101159006510, whole genome shotgun sequence 5,671
AAXZ01000023.1 Rhodobacteraceae bacterium HTCC2150 1101159006485, whole genome shotgun sequence 2,848
AAXZ01000024.1 Rhodobacteraceae bacterium HTCC2150 1101159006498, whole genome shotgun sequence 1,157
AAXZ01000025.1 Rhodobacteraceae bacterium HTCC2150 1101159006509, whole genome shotgun sequence 828

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory