fast.genomicscompare 6,575 genera of bacteria & archaea

 

HIMB100 sp000238815 HIMB100

Genome identifier: GCA_000238815.2

NCBI assembly name: ASM23881v2

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Puniceispirillales, Puniceispirillaceae, HIMB100, HIMB100 sp000238815

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 10

Genes: 2,376 Protein-coding: 2,334 RNAs: 42 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
AFXB01000001.1 SAR116 cluster alpha proteobacterium HIMB100 contig1, whole genome shotgun sequence 307,337
AFXB01000002.1 SAR116 cluster alpha proteobacterium HIMB100 contig2, whole genome shotgun sequence 61,268
AFXB01000003.1 SAR116 cluster alpha proteobacterium HIMB100 contig3, whole genome shotgun sequence 30,717
AFXB01000004.1 SAR116 cluster alpha proteobacterium HIMB100 contig4, whole genome shotgun sequence 244,129
AFXB01000005.1 SAR116 cluster alpha proteobacterium HIMB100 contig5, whole genome shotgun sequence 36,778
AFXB01000006.1 SAR116 cluster alpha proteobacterium HIMB100 contig6, whole genome shotgun sequence 286,759
AFXB01000007.1 SAR116 cluster alpha proteobacterium HIMB100 contig7, whole genome shotgun sequence 85,335
AFXB01000008.1 SAR116 cluster alpha proteobacterium HIMB100 contig8, whole genome shotgun sequence 142,711
AFXB01000009.1 SAR116 cluster alpha proteobacterium HIMB100 contig9, whole genome shotgun sequence 96,421
AFXB01000010.1 SAR116 cluster alpha proteobacterium HIMB100 contig10, whole genome shotgun sequence 1,167,490

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory