fast.genomicscompare 6,575 genera of bacteria & archaea

 

COE1 sp000403335 COE1

Genome identifier: GCA_000403335.2

NCBI assembly name: Lach_bact_COE1_V1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, COE1, COE1 sp000403335

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae

Scaffolds: 19

Genes: 4,740 Protein-coding: 4,672 RNAs: 68 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
KE159617.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.1, whole genome shotgun sequence 1,322,351
KE159618.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.10, whole genome shotgun sequence 24,787
KE159619.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.11, whole genome shotgun sequence 21,300
KE159620.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.12, whole genome shotgun sequence 3,317
KE159621.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.13, whole genome shotgun sequence 2,135
KE159622.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.14, whole genome shotgun sequence 2,135
KE159623.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.15, whole genome shotgun sequence 2,135
KE159624.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.16, whole genome shotgun sequence 2,134
KE159625.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.17, whole genome shotgun sequence 2,134
KE159626.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.18, whole genome shotgun sequence 1,606
KE159627.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.19, whole genome shotgun sequence 1,606
KE159628.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.2, whole genome shotgun sequence 1,137,233
KE159629.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.3, whole genome shotgun sequence 950,646
KE159630.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.4, whole genome shotgun sequence 633,585
KE159631.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.5, whole genome shotgun sequence 424,905
KE159632.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.6, whole genome shotgun sequence 257,424
KE159633.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.7, whole genome shotgun sequence 101,406
KE159634.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.8, whole genome shotgun sequence 43,997
KE159635.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.9, whole genome shotgun sequence 32,771

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory