fast.genomicscompare 6,575 genera of bacteria & archaea

 

MD308 sp000403475 3-2

Genome identifier: GCA_000403475.2

NCBI assembly name: Lach_bact_3-2_V1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, MD308, MD308 sp000403475

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae

Scaffolds: 4

Genes: 4,273 Protein-coding: 4,216 RNAs: 57 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
KE159795.1 Lachnospiraceae bacterium 3-2 genomic scaffold acPFJ-supercont1.1, whole genome shotgun sequence 2,382,349
KE159796.1 Lachnospiraceae bacterium 3-2 genomic scaffold acPFJ-supercont1.2, whole genome shotgun sequence 1,097,983
KE159797.1 Lachnospiraceae bacterium 3-2 genomic scaffold acPFJ-supercont1.3, whole genome shotgun sequence 613,283
KE159798.1 Lachnospiraceae bacterium 3-2 genomic scaffold acPFJ-supercont1.4, whole genome shotgun sequence 362,008

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory