fast.genomicscompare 6,575 genera of bacteria & archaea

 

Suilimivivens sp000403495 1-Oct

Genome identifier: GCA_000403495.2

NCBI assembly name: Lach_bact_10-1_V1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Suilimivivens, Suilimivivens sp000403495

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae

Scaffolds: 25

Genes: 4,378 Protein-coding: 4,321 RNAs: 57 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
KE159799.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.1, whole genome shotgun sequence 1,467,259
KE159800.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.10, whole genome shotgun sequence 47,479
KE159801.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.11, whole genome shotgun sequence 17,095
KE159802.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.12, whole genome shotgun sequence 9,106
KE159803.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.13, whole genome shotgun sequence 7,588
KE159804.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.14, whole genome shotgun sequence 1,449
KE159805.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.15, whole genome shotgun sequence 1,883
KE159806.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.16, whole genome shotgun sequence 2,652
KE159807.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.17, whole genome shotgun sequence 1,399
KE159808.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.18, whole genome shotgun sequence 1,354
KE159809.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.19, whole genome shotgun sequence 1,936
KE159810.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.2, whole genome shotgun sequence 1,081,135
KE159811.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.20, whole genome shotgun sequence 1,648
KE159812.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.21, whole genome shotgun sequence 1,191
KE159813.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.22, whole genome shotgun sequence 1,173
KE159814.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.23, whole genome shotgun sequence 1,105
KE159815.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.24, whole genome shotgun sequence 1,055
KE159816.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.25, whole genome shotgun sequence 1,030
KE159817.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.3, whole genome shotgun sequence 491,607
KE159818.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.4, whole genome shotgun sequence 351,376
KE159819.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.5, whole genome shotgun sequence 315,824
KE159820.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.6, whole genome shotgun sequence 286,003
KE159821.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.7, whole genome shotgun sequence 223,055
KE159822.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.8, whole genome shotgun sequence 167,910
KE159823.1 Lachnospiraceae bacterium 10-1 genomic scaffold acPFo-supercont1.9, whole genome shotgun sequence 88,340

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory