fast.genomicscompare 6,575 genera of bacteria & archaea

 

HIMB11 sp000472185 HIMB11

Genome identifier: GCA_000472185.1

NCBI assembly name: HIMB11v1.0

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, HIMB11, HIMB11 sp000472185

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae

Scaffolds: 34

Genes: 3,233 Protein-coding: 3,183 RNAs: 50 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
AVDB01000001.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig34.1, whole genome shotgun sequence 442,822
AVDB01000002.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig13.2, whole genome shotgun sequence 409,739
AVDB01000003.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig28.3, whole genome shotgun sequence 346,953
AVDB01000004.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig5.4, whole genome shotgun sequence 340,699
AVDB01000005.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig9.5, whole genome shotgun sequence 282,310
AVDB01000006.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig17.6, whole genome shotgun sequence 267,064
AVDB01000007.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig14.7, whole genome shotgun sequence 219,366
AVDB01000008.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig30.8, whole genome shotgun sequence 150,107
AVDB01000009.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig3.9, whole genome shotgun sequence 117,505
AVDB01000010.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig15.10, whole genome shotgun sequence 104,997
AVDB01000011.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig36.11, whole genome shotgun sequence 101,409
AVDB01000012.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig32.12, whole genome shotgun sequence 71,507
AVDB01000013.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig40.13, whole genome shotgun sequence 48,654
AVDB01000014.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig2.14, whole genome shotgun sequence 39,666
AVDB01000015.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig24.15, whole genome shotgun sequence 29,014
AVDB01000016.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig11.16, whole genome shotgun sequence 28,139
AVDB01000017.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig42.17, whole genome shotgun sequence 24,680
AVDB01000018.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig38.18, whole genome shotgun sequence 13,453
AVDB01000019.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig21.19, whole genome shotgun sequence 9,836
AVDB01000020.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig23.20, whole genome shotgun sequence 8,421
AVDB01000021.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig26.21, whole genome shotgun sequence 8,104
AVDB01000022.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig44.22, whole genome shotgun sequence 7,255
AVDB01000023.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig4.23, whole genome shotgun sequence 5,917
AVDB01000024.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig7.24, whole genome shotgun sequence 4,868
AVDB01000025.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig25.25, whole genome shotgun sequence 4,848
AVDB01000026.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig19.26, whole genome shotgun sequence 2,739
AVDB01000027.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig31.27, whole genome shotgun sequence 2,075
AVDB01000028.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig6.28, whole genome shotgun sequence 1,445
AVDB01000029.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig16.29, whole genome shotgun sequence 1,288
AVDB01000030.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig10.30, whole genome shotgun sequence 1,200
AVDB01000031.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig22.31, whole genome shotgun sequence 847
AVDB01000032.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig1.32, whole genome shotgun sequence 759
AVDB01000033.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig18.33, whole genome shotgun sequence 607
AVDB01000034.1 Rhodobacteraceae bacterium HIMB11 HIMB11_contig8.34, whole genome shotgun sequence 454

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory