fast.genomicscompare 6,575 genera of bacteria & archaea

 

Paracaedimonas acanthamoebae 30173

Genome identifier: GCA_000743035.1

NCBI assembly name: ASM74303v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caedimonadales, Caedimonadaceae, Paracaedimonas, Paracaedimonas acanthamoebae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Holosporales, Caedimonadaceae, Candidatus Paracaedimonas, Candidatus Paracaedimonas acanthamoebae

Scaffolds: 5

Genes: 1,775 Protein-coding: 1,683 RNAs: 46 pseudogenes: 46

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
CP008936.1 Candidatus Caedibacter acanthamoebae, complete genome 1,722,347
CP008937.1 Candidatus Caedibacter acanthamoebae plasmid Plasmid_00001, complete sequence 148,131
CP008938.1 Candidatus Caedibacter acanthamoebae plasmid Plasmid_00002, complete sequence 71,042
CP008939.1 Candidatus Caedibacter acanthamoebae plasmid Plasmid_00003, complete sequence 169,123
CP008940.1 Candidatus Caedibacter acanthamoebae plasmid Plasmid_00004, complete sequence 65,130

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory