fast.genomicscompare 6,575 genera of bacteria & archaea

 

Ruminiclostridium_E siraeum 2789STDY5834928

Genome identifier: GCA_001404415.1

NCBI assembly name: 14207_7#51

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Oscillospirales, Ruminococcaceae, Ruminiclostridium_E, Ruminiclostridium_E siraeum

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Oscillospiraceae, [Eubacterium] siraeum

Scaffolds: 47

Genes: 2,610 Protein-coding: 2,560 RNAs: 50 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
CZBY01000001.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000001, whole genome shotgun sequence 268,726
CZBY01000002.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000002, whole genome shotgun sequence 203,207
CZBY01000003.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000003, whole genome shotgun sequence 180,493
CZBY01000004.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000004, whole genome shotgun sequence 167,461
CZBY01000005.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000005, whole genome shotgun sequence 157,960
CZBY01000006.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000006, whole genome shotgun sequence 141,425
CZBY01000007.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000007, whole genome shotgun sequence 118,976
CZBY01000008.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000008, whole genome shotgun sequence 116,605
CZBY01000009.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000009, whole genome shotgun sequence 108,406
CZBY01000010.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000010, whole genome shotgun sequence 102,896
CZBY01000011.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000011, whole genome shotgun sequence 97,309
CZBY01000012.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000012, whole genome shotgun sequence 94,905
CZBY01000013.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000013, whole genome shotgun sequence 91,348
CZBY01000014.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000014, whole genome shotgun sequence 90,927
CZBY01000015.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000015, whole genome shotgun sequence 86,240
CZBY01000016.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000016, whole genome shotgun sequence 77,891
CZBY01000017.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000017, whole genome shotgun sequence 75,122
CZBY01000018.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000018, whole genome shotgun sequence 65,985
CZBY01000019.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000019, whole genome shotgun sequence 62,634
CZBY01000020.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000020, whole genome shotgun sequence 53,907
CZBY01000021.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000021, whole genome shotgun sequence 50,136
CZBY01000022.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000022, whole genome shotgun sequence 44,920
CZBY01000023.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000023, whole genome shotgun sequence 43,550
CZBY01000024.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000024, whole genome shotgun sequence 42,380
CZBY01000025.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000025, whole genome shotgun sequence 40,391
CZBY01000026.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000026, whole genome shotgun sequence 38,670
CZBY01000027.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000027, whole genome shotgun sequence 31,980
CZBY01000028.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000028, whole genome shotgun sequence 31,730
CZBY01000029.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000029, whole genome shotgun sequence 27,989
CZBY01000030.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000030, whole genome shotgun sequence 22,105
CZBY01000031.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000031, whole genome shotgun sequence 20,828
CZBY01000032.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000032, whole genome shotgun sequence 17,342
CZBY01000033.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000033, whole genome shotgun sequence 16,423
CZBY01000034.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000034, whole genome shotgun sequence 15,225
CZBY01000035.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000035, whole genome shotgun sequence 15,166
CZBY01000036.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000036, whole genome shotgun sequence 13,886
CZBY01000037.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000037, whole genome shotgun sequence 10,326
CZBY01000038.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000038, whole genome shotgun sequence 6,168
CZBY01000039.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000039, whole genome shotgun sequence 5,850
CZBY01000040.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000040, whole genome shotgun sequence 1,704
CZBY01000041.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000041, whole genome shotgun sequence 1,466
CZBY01000042.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000042, whole genome shotgun sequence 1,077
CZBY01000043.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000043, whole genome shotgun sequence 426
CZBY01000044.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000044, whole genome shotgun sequence 381
CZBY01000045.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000045, whole genome shotgun sequence 378
CZBY01000046.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000046, whole genome shotgun sequence 341
CZBY01000047.1 [Eubacterium] siraeum strain 2789STDY5834928 genome assembly, contig: SCcontig000047, whole genome shotgun sequence 313

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory