fast.genomicscompare 6,575 genera of bacteria & archaea

 

32-111 sp001508335 32_111

Genome identifier: GCA_001508335.1

NCBI assembly name: ASM150833v1

GTDB taxonomy: Bacteria, WOR-3, 32-111, 32-111, 32-111, 32-111, 32-111 sp001508335

NCBI taxonomy: Bacteria

Scaffolds: 25

Genes: 1,769 Protein-coding: 1,769 RNAs: 0 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
LGFX01000001.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_0, whole genome shotgun sequence 253,484
LGFX01000002.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_1, whole genome shotgun sequence 148,767
LGFX01000003.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_2, whole genome shotgun sequence 144,123
LGFX01000004.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_3, whole genome shotgun sequence 254,274
LGFX01000005.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_4, whole genome shotgun sequence 131,941
LGFX01000006.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_5, whole genome shotgun sequence 139,749
LGFX01000007.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_7, whole genome shotgun sequence 110,614
LGFX01000008.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_11, whole genome shotgun sequence 122,186
LGFX01000009.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_22, whole genome shotgun sequence 63,012
LGFX01000010.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_26, whole genome shotgun sequence 60,540
LGFX01000011.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_40, whole genome shotgun sequence 50,500
LGFX01000012.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_48, whole genome shotgun sequence 48,576
LGFX01000013.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_54, whole genome shotgun sequence 46,990
LGFX01000014.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_101, whole genome shotgun sequence 60,266
LGFX01000015.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_106, whole genome shotgun sequence 65,367
LGFX01000016.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_121, whole genome shotgun sequence 34,931
LGFX01000017.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_247, whole genome shotgun sequence 27,744
LGFX01000018.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_275, whole genome shotgun sequence 26,227
LGFX01000019.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_435, whole genome shotgun sequence 20,481
LGFX01000020.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_545, whole genome shotgun sequence 18,029
LGFX01000021.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_989, whole genome shotgun sequence 12,177
LGFX01000022.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_2661, whole genome shotgun sequence 7,481
LGFX01000023.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_4406, whole genome shotgun sequence 4,390
LGFX01000024.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_5947, whole genome shotgun sequence 5,406
LGFX01000025.1 MAG: candidate division TA06 bacterium 32_111 MPI_scaffold_8114, whole genome shotgun sequence 4,572

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory