fast.genomicscompare 6,575 genera of bacteria & archaea

 

Methanofastidiosum sp001587575 BMIXfssc0709_Meth_Bin006

Genome identifier: GCA_001587575.1

NCBI assembly name: ASM158757v1

GTDB taxonomy: Archaea, Methanobacteriota_B, Thermococci, Methanofastidiosales, Methanofastidiosaceae, Methanofastidiosum, Methanofastidiosum sp001587575

NCBI taxonomy: Archaea, Euryarchaeota, Candidatus Methanofastidiosa, Candidatus Methanofastidiosum, Candidatus Methanofastidiosum methylthiophilus

Scaffolds: 61

Genes: 1,769 Protein-coding: 1,730 RNAs: 39 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
LNJC01000001.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000001, whole genome shotgun sequence 118,394
LNJC01000002.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000002, whole genome shotgun sequence 91,283
LNJC01000003.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000003, whole genome shotgun sequence 78,710
LNJC01000004.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000004, whole genome shotgun sequence 63,355
LNJC01000005.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000005, whole genome shotgun sequence 54,729
LNJC01000006.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000006, whole genome shotgun sequence 47,917
LNJC01000007.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000007, whole genome shotgun sequence 44,835
LNJC01000008.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000008, whole genome shotgun sequence 42,340
LNJC01000009.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000009, whole genome shotgun sequence 41,719
LNJC01000010.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000010, whole genome shotgun sequence 40,806
LNJC01000011.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000011, whole genome shotgun sequence 39,915
LNJC01000012.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000012, whole genome shotgun sequence 37,986
LNJC01000013.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000013, whole genome shotgun sequence 36,953
LNJC01000014.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000014, whole genome shotgun sequence 34,500
LNJC01000015.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000015, whole genome shotgun sequence 34,208
LNJC01000016.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000016, whole genome shotgun sequence 33,378
LNJC01000017.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000017, whole genome shotgun sequence 32,919
LNJC01000018.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000018, whole genome shotgun sequence 32,417
LNJC01000019.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000019, whole genome shotgun sequence 32,373
LNJC01000020.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000020, whole genome shotgun sequence 31,596
LNJC01000021.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000021, whole genome shotgun sequence 31,539
LNJC01000022.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000022, whole genome shotgun sequence 30,681
LNJC01000023.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000023, whole genome shotgun sequence 30,008
LNJC01000024.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000024, whole genome shotgun sequence 29,540
LNJC01000025.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000025, whole genome shotgun sequence 25,134
LNJC01000026.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000026, whole genome shotgun sequence 24,893
LNJC01000027.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000027, whole genome shotgun sequence 23,810
LNJC01000028.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000028, whole genome shotgun sequence 23,702
LNJC01000029.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000029, whole genome shotgun sequence 21,484
LNJC01000030.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000030, whole genome shotgun sequence 19,858
LNJC01000031.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000031, whole genome shotgun sequence 19,753
LNJC01000032.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000032, whole genome shotgun sequence 19,437
LNJC01000033.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000033, whole genome shotgun sequence 17,877
LNJC01000034.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000034, whole genome shotgun sequence 17,799
LNJC01000035.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000035, whole genome shotgun sequence 17,654
LNJC01000036.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000036, whole genome shotgun sequence 17,261
LNJC01000037.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000037, whole genome shotgun sequence 16,841
LNJC01000038.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000038, whole genome shotgun sequence 15,789
LNJC01000039.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000039, whole genome shotgun sequence 14,629
LNJC01000040.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000040, whole genome shotgun sequence 13,331
LNJC01000041.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000041, whole genome shotgun sequence 13,090
LNJC01000042.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000042, whole genome shotgun sequence 12,179
LNJC01000043.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000043, whole genome shotgun sequence 11,904
LNJC01000044.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000044, whole genome shotgun sequence 11,797
LNJC01000045.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000045, whole genome shotgun sequence 10,961
LNJC01000046.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000046, whole genome shotgun sequence 8,977
LNJC01000047.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000047, whole genome shotgun sequence 8,835
LNJC01000048.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000048, whole genome shotgun sequence 8,795
LNJC01000049.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000049, whole genome shotgun sequence 8,731
LNJC01000050.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000050, whole genome shotgun sequence 8,677
LNJC01000051.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000051, whole genome shotgun sequence 8,634
LNJC01000052.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000052, whole genome shotgun sequence 8,509
LNJC01000053.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000053, whole genome shotgun sequence 7,626
LNJC01000054.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000054, whole genome shotgun sequence 5,128
LNJC01000055.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000055, whole genome shotgun sequence 4,638
LNJC01000056.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000056, whole genome shotgun sequence 4,135
LNJC01000057.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000057, whole genome shotgun sequence 4,024
LNJC01000058.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000058, whole genome shotgun sequence 3,255
LNJC01000059.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000059, whole genome shotgun sequence 2,943
LNJC01000060.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000060, whole genome shotgun sequence 2,010
LNJC01000061.1 MAG: Candidatus Methanofastidiosum methylothiophilum isolate BMIXfssc0709_Meth_Bin006 APG12_contig000061, whole genome shotgun sequence 1,530

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory