fast.genomicscompare 6,575 genera of bacteria & archaea

 

Syntropharchaeum caldarius BOX2

Genome identifier: GCA_001766815.1

NCBI assembly name: ASM176681v1

GTDB taxonomy: Archaea, Halobacteriota, Syntropharchaeia, Syntropharchaeales, Syntropharchaeaceae, Syntropharchaeum, Syntropharchaeum caldarius

NCBI taxonomy: Archaea, Euryarchaeota, Methanomicrobia, Methanosarcinales, Candidatus Syntrophoarchaeum, Candidatus Syntrophoarchaeum caldarius

Scaffolds: 10

Genes: 1,828 Protein-coding: 1,787 RNAs: 41 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
LYOS01000001.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig01, whole genome shotgun sequence 491,986
LYOS01000002.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig02, whole genome shotgun sequence 410,801
LYOS01000003.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig03, whole genome shotgun sequence 288,741
LYOS01000004.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig04, whole genome shotgun sequence 221,392
LYOS01000005.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig05, whole genome shotgun sequence 100,686
LYOS01000006.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig06, whole genome shotgun sequence 52,146
LYOS01000007.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig07, whole genome shotgun sequence 45,392
LYOS01000008.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig08, whole genome shotgun sequence 41,652
LYOS01000009.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 BOX2_8_reassembly_contig09, whole genome shotgun sequence 7,089
LYOS01000010.1 MAG: Candidatus Syntrophoarchaeum caldarius isolate BOX2 unknown_id, whole genome shotgun sequence 6,196

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory