fast.genomicscompare 6,575 genera of bacteria & archaea

 

2-01-FULL-41-14 sp001767855 none

Genome identifier: GCA_001767855.1

NCBI assembly name: ASM176785v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, UBA7879, UBA5542, 2-01-FULL-41-14, 2-01-FULL-41-14 sp001767855

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 3

Genes: 1,006 Protein-coding: 956 RNAs: 45 pseudogenes: 5

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
MEMF01000001.1 MAG: Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_41_14 rifcsphigho2_01_scaffold_209, whole genome shotgun sequence 106,248
MEMF01000002.1 MAG: Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_41_14 rifcsphigho2_01_scaffold_5, whole genome shotgun sequence 873,023
MEMF01000003.1 MAG: Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_41_14 rifcsphigho2_01_scaffold_9033, whole genome shotgun sequence 15,226

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory