fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA2645 sp001767955 none

Genome identifier: GCA_001767955.1

NCBI assembly name: ASM176795v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rickettsiales, UBA1997, UBA2645, UBA2645 sp001767955

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 38

Genes: 1,393 Protein-coding: 1,333 RNAs: 38 pseudogenes: 22

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
MEMO01000001.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_10055, whole genome shotgun sequence 27,360
MEMO01000002.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_10135, whole genome shotgun sequence 23,992
MEMO01000003.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_10860, whole genome shotgun sequence 42,464
MEMO01000004.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_11281, whole genome shotgun sequence 25,910
MEMO01000005.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_11618, whole genome shotgun sequence 16,674
MEMO01000006.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_13168, whole genome shotgun sequence 38,291
MEMO01000007.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_13912, whole genome shotgun sequence 17,705
MEMO01000008.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_14457, whole genome shotgun sequence 11,176
MEMO01000009.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_1447, whole genome shotgun sequence 78,445
MEMO01000010.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_1546, whole genome shotgun sequence 39,788
MEMO01000011.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_17625, whole genome shotgun sequence 41,936
MEMO01000012.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_20024, whole genome shotgun sequence 22,606
MEMO01000013.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_20697, whole genome shotgun sequence 19,894
MEMO01000014.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_22584, whole genome shotgun sequence 27,753
MEMO01000015.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_22674, whole genome shotgun sequence 22,337
MEMO01000016.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_2370, whole genome shotgun sequence 103,478
MEMO01000017.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_2419, whole genome shotgun sequence 87,730
MEMO01000018.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_24273, whole genome shotgun sequence 30,239
MEMO01000019.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_24811, whole genome shotgun sequence 11,099
MEMO01000020.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_29774, whole genome shotgun sequence 13,018
MEMO01000021.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_3005, whole genome shotgun sequence 111,120
MEMO01000022.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_31265, whole genome shotgun sequence 12,469
MEMO01000023.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_3380, whole genome shotgun sequence 50,292
MEMO01000024.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_3667, whole genome shotgun sequence 27,663
MEMO01000025.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_3789, whole genome shotgun sequence 26,869
MEMO01000026.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_3940, whole genome shotgun sequence 43,756
MEMO01000027.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_3957, whole genome shotgun sequence 74,300
MEMO01000028.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_39766, whole genome shotgun sequence 8,850
MEMO01000029.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_4234, whole genome shotgun sequence 31,969
MEMO01000030.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_42357, whole genome shotgun sequence 5,677
MEMO01000031.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_5062, whole genome shotgun sequence 122,577
MEMO01000032.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_51147, whole genome shotgun sequence 7,106
MEMO01000033.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_5295, whole genome shotgun sequence 47,394
MEMO01000034.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_6535, whole genome shotgun sequence 31,646
MEMO01000035.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_7070, whole genome shotgun sequence 56,579
MEMO01000036.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_8304, whole genome shotgun sequence 35,826
MEMO01000037.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_8986, whole genome shotgun sequence 25,929
MEMO01000038.1 MAG: Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 rifcsplowo2_01_scaffold_9104, whole genome shotgun sequence 20,098

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory