fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA2226 sp001777915 none

Genome identifier: GCA_001777915.1

NCBI assembly name: ASM177791v1

GTDB taxonomy: Bacteria, Edwardsbacteria, AC1, AC1, EtOH8, UBA2226, UBA2226 sp001777915

NCBI taxonomy: Bacteria, Candidatus Edwardsbacteria

Scaffolds: 9

Genes: 2,432 Protein-coding: 2,366 RNAs: 52 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
MFFN01000001.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_10, whole genome shotgun sequence 240,214
MFFN01000002.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_12, whole genome shotgun sequence 317,673
MFFN01000003.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_19, whole genome shotgun sequence 238,143
MFFN01000004.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_2, whole genome shotgun sequence 958,395
MFFN01000005.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_24, whole genome shotgun sequence 239,254
MFFN01000006.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_4, whole genome shotgun sequence 402,934
MFFN01000007.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_46, whole genome shotgun sequence 114,248
MFFN01000008.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_55, whole genome shotgun sequence 137,221
MFFN01000009.1 MAG: Candidatus Edwardsbacteria bacterium RifOxyA12_full_54_48 rifixya3_full_scaffold_86, whole genome shotgun sequence 87,453

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory