fast.genomicscompare 6,575 genera of bacteria & archaea

 

2-12-FULL-62-27 sp001784175 none

Genome identifier: GCA_001784175.1

NCBI assembly name: ASM178417v1

GTDB taxonomy: Bacteria, Lindowbacteria, 2-12-FULL-62-27, 2-12-FULL-62-27, 2-12-FULL-62-27, 2-12-FULL-62-27, 2-12-FULL-62-27 sp001784175

NCBI taxonomy: Bacteria, Candidatus Lindowbacteria

Scaffolds: 44

Genes: 3,524 Protein-coding: 3,391 RNAs: 79 pseudogenes: 54

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
MFPR01000001.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_10, whole genome shotgun sequence 292,560
MFPR01000002.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_100, whole genome shotgun sequence 110,685
MFPR01000003.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_1013, whole genome shotgun sequence 75,835
MFPR01000004.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_12, whole genome shotgun sequence 507,730
MFPR01000005.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_1205, whole genome shotgun sequence 32,192
MFPR01000006.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_126, whole genome shotgun sequence 266,225
MFPR01000007.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_13296, whole genome shotgun sequence 8,714
MFPR01000008.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_13595, whole genome shotgun sequence 10,229
MFPR01000009.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_1449, whole genome shotgun sequence 48,616
MFPR01000010.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_1512, whole genome shotgun sequence 31,112
MFPR01000011.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_170, whole genome shotgun sequence 83,090
MFPR01000012.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_173, whole genome shotgun sequence 82,235
MFPR01000013.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_187, whole genome shotgun sequence 82,110
MFPR01000014.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_199, whole genome shotgun sequence 75,796
MFPR01000015.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_20510, whole genome shotgun sequence 12,979
MFPR01000016.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_2075, whole genome shotgun sequence 31,919
MFPR01000017.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_21, whole genome shotgun sequence 214,974
MFPR01000018.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_2100, whole genome shotgun sequence 24,818
MFPR01000019.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_218, whole genome shotgun sequence 71,993
MFPR01000020.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_26, whole genome shotgun sequence 279,247
MFPR01000021.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_2616, whole genome shotgun sequence 24,433
MFPR01000022.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_2777, whole genome shotgun sequence 35,200
MFPR01000023.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_461, whole genome shotgun sequence 49,605
MFPR01000024.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_462, whole genome shotgun sequence 59,683
MFPR01000025.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_4679, whole genome shotgun sequence 15,753
MFPR01000026.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_49, whole genome shotgun sequence 190,535
MFPR01000027.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_498, whole genome shotgun sequence 93,214
MFPR01000028.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_5, whole genome shotgun sequence 392,036
MFPR01000029.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_5561, whole genome shotgun sequence 14,293
MFPR01000030.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_56, whole genome shotgun sequence 173,419
MFPR01000031.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_608, whole genome shotgun sequence 43,779
MFPR01000032.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_6194, whole genome shotgun sequence 13,475
MFPR01000033.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_65, whole genome shotgun sequence 129,375
MFPR01000034.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_6605, whole genome shotgun sequence 17,866
MFPR01000035.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_670, whole genome shotgun sequence 42,231
MFPR01000036.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_675, whole genome shotgun sequence 42,745
MFPR01000037.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_71, whole genome shotgun sequence 123,643
MFPR01000038.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_761, whole genome shotgun sequence 40,189
MFPR01000039.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_7735, whole genome shotgun sequence 11,919
MFPR01000040.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_78, whole genome shotgun sequence 123,045
MFPR01000041.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_80, whole genome shotgun sequence 121,448
MFPR01000042.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_8176, whole genome shotgun sequence 11,520
MFPR01000043.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_83, whole genome shotgun sequence 211,308
MFPR01000044.1 MAG: Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_883, whole genome shotgun sequence 64,490

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory