fast.genomicscompare 6,575 genera of bacteria & archaea

 

2-02-FULL-38-14-A sp001790855 none

Genome identifier: GCA_001790855.1

NCBI assembly name: ASM179085v1

GTDB taxonomy: Bacteria, Schekmanbacteria, GWA2-38-11, GWA2-38-11, GWA2-38-11, 2-02-FULL-38-14-A, 2-02-FULL-38-14-A sp001790855

NCBI taxonomy: Bacteria, Candidatus Schekmanbacteria

Scaffolds: 43

Genes: 2,485 Protein-coding: 2,380 RNAs: 54 pseudogenes: 51

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
MGDH01000001.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_102, whole genome shotgun sequence 108,728
MGDH01000002.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_10521, whole genome shotgun sequence 12,217
MGDH01000003.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_10626, whole genome shotgun sequence 10,931
MGDH01000004.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_109, whole genome shotgun sequence 84,236
MGDH01000005.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_1101, whole genome shotgun sequence 34,639
MGDH01000006.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_11290, whole genome shotgun sequence 12,524
MGDH01000007.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_1259, whole genome shotgun sequence 33,351
MGDH01000008.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_141, whole genome shotgun sequence 78,989
MGDH01000009.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_147, whole genome shotgun sequence 149,485
MGDH01000010.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_149, whole genome shotgun sequence 113,793
MGDH01000011.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_15, whole genome shotgun sequence 264,400
MGDH01000012.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_16194, whole genome shotgun sequence 15,841
MGDH01000013.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_16787, whole genome shotgun sequence 7,783
MGDH01000014.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_19016, whole genome shotgun sequence 8,620
MGDH01000015.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_214, whole genome shotgun sequence 85,010
MGDH01000016.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_253, whole genome shotgun sequence 71,181
MGDH01000017.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_26568, whole genome shotgun sequence 5,849
MGDH01000018.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_33, whole genome shotgun sequence 123,527
MGDH01000019.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_338, whole genome shotgun sequence 62,548
MGDH01000020.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_3666, whole genome shotgun sequence 29,766
MGDH01000021.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_373, whole genome shotgun sequence 82,580
MGDH01000022.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_38, whole genome shotgun sequence 193,071
MGDH01000023.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_3925, whole genome shotgun sequence 35,830
MGDH01000024.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_398, whole genome shotgun sequence 80,944
MGDH01000025.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_402, whole genome shotgun sequence 57,183
MGDH01000026.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_405, whole genome shotgun sequence 51,748
MGDH01000027.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_4132, whole genome shotgun sequence 19,776
MGDH01000028.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_430, whole genome shotgun sequence 62,973
MGDH01000029.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_476, whole genome shotgun sequence 94,423
MGDH01000030.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_5151, whole genome shotgun sequence 15,760
MGDH01000031.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_5451, whole genome shotgun sequence 25,242
MGDH01000032.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_559, whole genome shotgun sequence 45,217
MGDH01000033.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_6335, whole genome shotgun sequence 14,029
MGDH01000034.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_6432, whole genome shotgun sequence 13,878
MGDH01000035.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_6532, whole genome shotgun sequence 26,708
MGDH01000036.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_72, whole genome shotgun sequence 131,603
MGDH01000037.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_768, whole genome shotgun sequence 41,048
MGDH01000038.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_78, whole genome shotgun sequence 95,132
MGDH01000039.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_828, whole genome shotgun sequence 38,082
MGDH01000040.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_8487, whole genome shotgun sequence 15,270
MGDH01000041.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_889, whole genome shotgun sequence 57,790
MGDH01000042.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_96, whole genome shotgun sequence 158,603
MGDH01000043.1 MAG: Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 rifcsplowo2_02_scaffold_9653, whole genome shotgun sequence 10,920

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory