fast.genomicscompare 6,575 genera of bacteria & archaea

 

2-12-FULL-40-28 sp001798135 none

Genome identifier: GCA_001798135.1

NCBI assembly name: ASM179813v1

GTDB taxonomy: Bacteria, UBA10199, UBA10199, UBA10199, 2-12-FULL-40-28, 2-12-FULL-40-28, 2-12-FULL-40-28 sp001798135

NCBI taxonomy: Bacteria, Deltaproteobacteria

Scaffolds: 31

Genes: 2,082 Protein-coding: 2,013 RNAs: 52 pseudogenes: 17

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
MGRJ01000001.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_1117, whole genome shotgun sequence 39,870
MGRJ01000002.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_1160, whole genome shotgun sequence 58,817
MGRJ01000003.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_1176, whole genome shotgun sequence 38,904
MGRJ01000004.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_125, whole genome shotgun sequence 133,063
MGRJ01000005.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_1473, whole genome shotgun sequence 50,703
MGRJ01000006.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_166, whole genome shotgun sequence 95,650
MGRJ01000007.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_1983, whole genome shotgun sequence 29,990
MGRJ01000008.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_2239, whole genome shotgun sequence 28,374
MGRJ01000009.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_225, whole genome shotgun sequence 103,344
MGRJ01000010.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_2262, whole genome shotgun sequence 40,028
MGRJ01000011.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_25461, whole genome shotgun sequence 10,760
MGRJ01000012.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_25521, whole genome shotgun sequence 13,640
MGRJ01000013.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_26804, whole genome shotgun sequence 8,073
MGRJ01000014.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_30491, whole genome shotgun sequence 6,346
MGRJ01000015.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_33, whole genome shotgun sequence 271,450
MGRJ01000016.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_3436, whole genome shotgun sequence 22,696
MGRJ01000017.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_3454, whole genome shotgun sequence 23,505
MGRJ01000018.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_3457, whole genome shotgun sequence 22,616
MGRJ01000019.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_35368, whole genome shotgun sequence 5,803
MGRJ01000020.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_388, whole genome shotgun sequence 116,274
MGRJ01000021.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_3883, whole genome shotgun sequence 21,840
MGRJ01000022.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_442, whole genome shotgun sequence 76,978
MGRJ01000023.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_48, whole genome shotgun sequence 159,238
MGRJ01000024.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_54, whole genome shotgun sequence 284,941
MGRJ01000025.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_5409, whole genome shotgun sequence 17,839
MGRJ01000026.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_680, whole genome shotgun sequence 65,248
MGRJ01000027.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_73, whole genome shotgun sequence 140,175
MGRJ01000028.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_7483, whole genome shotgun sequence 14,880
MGRJ01000029.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_814, whole genome shotgun sequence 45,863
MGRJ01000030.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_920, whole genome shotgun sequence 82,863
MGRJ01000031.1 MAG: Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 rifcsphigho2_02_scaffold_96, whole genome shotgun sequence 127,911

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory