fast.genomicscompare 6,575 genera of bacteria & archaea

 

XYB12-FULL-38-5 sp001803165 none

Genome identifier: GCA_001803165.1

NCBI assembly name: ASM180316v1

GTDB taxonomy: Bacteria, Bacteroidota, Ignavibacteria, Ignavibacteriales, Melioribacteraceae, XYB12-FULL-38-5, XYB12-FULL-38-5 sp001803165

NCBI taxonomy: Bacteria, Ignavibacteriota, Ignavibacteria

Scaffolds: 22

Genes: 3,897 Protein-coding: 3,824 RNAs: 51 pseudogenes: 22

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
MHAZ01000001.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_11, whole genome shotgun sequence 299,836
MHAZ01000002.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_129, whole genome shotgun sequence 180,565
MHAZ01000003.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_15, whole genome shotgun sequence 255,567
MHAZ01000004.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_17, whole genome shotgun sequence 205,240
MHAZ01000005.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_1748, whole genome shotgun sequence 10,686
MHAZ01000006.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_2, whole genome shotgun sequence 504,572
MHAZ01000007.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_20, whole genome shotgun sequence 179,046
MHAZ01000008.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_215, whole genome shotgun sequence 55,648
MHAZ01000009.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_22, whole genome shotgun sequence 174,731
MHAZ01000010.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_221, whole genome shotgun sequence 54,370
MHAZ01000011.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_24, whole genome shotgun sequence 161,678
MHAZ01000012.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_25, whole genome shotgun sequence 267,008
MHAZ01000013.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_4151, whole genome shotgun sequence 5,852
MHAZ01000014.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_44, whole genome shotgun sequence 119,330
MHAZ01000015.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_441, whole genome shotgun sequence 34,701
MHAZ01000016.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_57, whole genome shotgun sequence 107,018
MHAZ01000017.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_6, whole genome shotgun sequence 536,938
MHAZ01000018.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_692, whole genome shotgun sequence 23,771
MHAZ01000019.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_8, whole genome shotgun sequence 320,548
MHAZ01000020.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_88, whole genome shotgun sequence 88,064
MHAZ01000021.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_9, whole genome shotgun sequence 735,008
MHAZ01000022.1 MAG: Stygiobacter sp. RIFOXYC2_FULL_38_25 rifoxyc2_full_scaffold_92, whole genome shotgun sequence 85,149

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory