fast.genomicscompare 6,575 genera of bacteria & archaea

 

DB1 sp001914235 DB1

Genome identifier: GCA_001914235.1

NCBI assembly name: ASM191423v1

GTDB taxonomy: Bacteria, Desulfobacterota, Desulfobulbia, Desulfobulbales, Desulfurivibrionaceae, DB1, DB1 sp001914235

NCBI taxonomy: Bacteria, Thermodesulfobacteriota, Desulfobulbia, Desulfobulbales, Desulfobulbaceae

Scaffolds: 28

Genes: 3,630 Protein-coding: 3,494 RNAs: 59 pseudogenes: 77

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
MQUF01000001.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_1, whole genome shotgun sequence 144,966
MQUF01000002.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_2, whole genome shotgun sequence 314,101
MQUF01000003.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_3, whole genome shotgun sequence 576,926
MQUF01000004.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_4, whole genome shotgun sequence 115,245
MQUF01000005.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_5, whole genome shotgun sequence 243,825
MQUF01000006.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_6, whole genome shotgun sequence 397,490
MQUF01000007.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_7, whole genome shotgun sequence 127,201
MQUF01000008.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_8, whole genome shotgun sequence 205,222
MQUF01000009.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_9, whole genome shotgun sequence 102,118
MQUF01000010.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_10, whole genome shotgun sequence 15,960
MQUF01000011.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_11, whole genome shotgun sequence 144,800
MQUF01000012.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_12, whole genome shotgun sequence 94,771
MQUF01000013.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_13, whole genome shotgun sequence 4,370
MQUF01000014.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_14, whole genome shotgun sequence 325,484
MQUF01000015.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_15, whole genome shotgun sequence 98,279
MQUF01000016.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_16, whole genome shotgun sequence 130,020
MQUF01000017.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_17, whole genome shotgun sequence 32,490
MQUF01000018.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_18, whole genome shotgun sequence 61,084
MQUF01000019.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_19, whole genome shotgun sequence 22,906
MQUF01000020.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_20, whole genome shotgun sequence 119,449
MQUF01000021.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_21, whole genome shotgun sequence 121,734
MQUF01000022.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_22, whole genome shotgun sequence 64,239
MQUF01000023.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_23, whole genome shotgun sequence 126,172
MQUF01000024.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_24, whole genome shotgun sequence 6,880
MQUF01000025.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_25, whole genome shotgun sequence 97,292
MQUF01000026.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_26, whole genome shotgun sequence 166,646
MQUF01000027.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_27, whole genome shotgun sequence 5,186
MQUF01000028.1 MAG: Desulfobulbaceae bacterium DB1 DB1_contig_28, whole genome shotgun sequence 3,325

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory