fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA3465 sp002730875 NP120

Genome identifier: GCA_002730875.1

NCBI assembly name: ASM273087v1

GTDB taxonomy: Bacteria, Spirochaetota, Leptospirae, Leptospirales, Leptonemataceae, UBA3465, UBA3465 sp002730875

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Spirochaetales, Spirochaetaceae

Scaffolds: 20

Genes: 4,296 Protein-coding: 4,222 RNAs: 44 pseudogenes: 30

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
PCBI01000001.1 MAG: Spirochaetaceae bacterium isolate NP120 64883, whole genome shotgun sequence 61,003
PCBI01000002.1 MAG: Spirochaetaceae bacterium isolate NP120 65968, whole genome shotgun sequence 300,322
PCBI01000003.1 MAG: Spirochaetaceae bacterium isolate NP120 66293, whole genome shotgun sequence 215,776
PCBI01000004.1 MAG: Spirochaetaceae bacterium isolate NP120 66742, whole genome shotgun sequence 11,002
PCBI01000005.1 MAG: Spirochaetaceae bacterium isolate NP120 97697, whole genome shotgun sequence 1,094,072
PCBI01000006.1 MAG: Spirochaetaceae bacterium isolate NP120 99225, whole genome shotgun sequence 274,768
PCBI01000007.1 MAG: Spirochaetaceae bacterium isolate NP120 103772, whole genome shotgun sequence 75,035
PCBI01000008.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1079973, whole genome shotgun sequence 39,992
PCBI01000009.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1081710, whole genome shotgun sequence 140,399
PCBI01000010.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1084502, whole genome shotgun sequence 244,899
PCBI01000011.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1084553, whole genome shotgun sequence 130,639
PCBI01000012.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1087916, whole genome shotgun sequence 270,355
PCBI01000013.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1092371, whole genome shotgun sequence 126,780
PCBI01000014.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1095503, whole genome shotgun sequence 68,790
PCBI01000015.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1095507, whole genome shotgun sequence 418,599
PCBI01000016.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1096378, whole genome shotgun sequence 224,632
PCBI01000017.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1096979, whole genome shotgun sequence 317,890
PCBI01000018.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1098322, whole genome shotgun sequence 280,736
PCBI01000019.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1102205, whole genome shotgun sequence 528,904
PCBI01000020.1 MAG: Spirochaetaceae bacterium isolate NP120 MHASMcontig_1103475, whole genome shotgun sequence 41,533

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory