fast.genomicscompare 6,575 genera of bacteria & archaea

 

1-14-0-20-47-16 sp002796325 CG11_big_fil_rev_8_21_14_0_20_47_16

Genome identifier: GCA_002796325.1

NCBI assembly name: ASM279632v1

GTDB taxonomy: Bacteria, UBA10199, UBA10199, GCA-002796325, 1-14-0-20-47-16, 1-14-0-20-47-16, 1-14-0-20-47-16 sp002796325

NCBI taxonomy: Bacteria, Deltaproteobacteria

Scaffolds: 20

Genes: 1,896 Protein-coding: 1,836 RNAs: 52 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
PCXA01000001.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_0_c, whole genome shotgun sequence 498,244
PCXA01000002.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_21_c, whole genome shotgun sequence 134,614
PCXA01000003.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_77635_c, whole genome shotgun sequence 1,572
PCXA01000004.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_92788_c, whole genome shotgun sequence 1,308
PCXA01000005.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_18924_c, whole genome shotgun sequence 3,816
PCXA01000006.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_20_c, whole genome shotgun sequence 134,731
PCXA01000007.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_14_c, whole genome shotgun sequence 228,144
PCXA01000008.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_212_c, whole genome shotgun sequence 54,478
PCXA01000009.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_191_c, whole genome shotgun sequence 57,187
PCXA01000010.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_37_c, whole genome shotgun sequence 116,105
PCXA01000011.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_2274_c, whole genome shotgun sequence 15,450
PCXA01000012.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_2187_c, whole genome shotgun sequence 15,768
PCXA01000013.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_32_c, whole genome shotgun sequence 119,342
PCXA01000014.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_112_c, whole genome shotgun sequence 109,069
PCXA01000015.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_121_c, whole genome shotgun sequence 124,163
PCXA01000016.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_118507_c, whole genome shotgun sequence 1,030
PCXA01000017.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_56908_c, whole genome shotgun sequence 1,905
PCXA01000018.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_1_c, whole genome shotgun sequence 270,706
PCXA01000019.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_472_c, whole genome shotgun sequence 59,174
PCXA01000020.1 MAG: Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 CG11_8_21_14_0.20_scaffold_96015_c, whole genome shotgun sequence 1,806

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory