fast.genomicscompare 6,575 genera of bacteria & archaea

 

PGXY01 sp002839375 HGW-Spirochaetae-1

Genome identifier: GCA_002839375.1

NCBI assembly name: ASM283937v1

GTDB taxonomy: Bacteria, Spirochaetota, UBA4802, UBA4802, UBA5550, PGXY01, PGXY01 sp002839375

NCBI taxonomy: Bacteria, Spirochaetota

Scaffolds: 14

Genes: 4,700 Protein-coding: 4,622 RNAs: 52 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
PGXY01000001.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_2, whole genome shotgun sequence 469,947
PGXY01000002.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_6, whole genome shotgun sequence 575,017
PGXY01000003.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_7, whole genome shotgun sequence 725,112
PGXY01000004.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_10, whole genome shotgun sequence 556,027
PGXY01000005.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_11, whole genome shotgun sequence 374,771
PGXY01000006.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_14, whole genome shotgun sequence 341,966
PGXY01000007.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_16, whole genome shotgun sequence 585,880
PGXY01000008.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_36, whole genome shotgun sequence 245,042
PGXY01000009.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_71, whole genome shotgun sequence 324,936
PGXY01000010.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_75, whole genome shotgun sequence 396,370
PGXY01000011.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_183, whole genome shotgun sequence 387,153
PGXY01000012.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_257, whole genome shotgun sequence 111,077
PGXY01000013.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_481, whole genome shotgun sequence 61,069
PGXY01000014.1 MAG: Spirochaetae bacterium HGW-Spirochaetae-1 08E140C01_z5_2013_Ig3399_v2_scaffold_676, whole genome shotgun sequence 47,049

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory