fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA4466 sp003149635 XM-24bin1

Genome identifier: GCA_003149635.1

NCBI assembly name: ASM314963v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Crocinitomicaceae, UBA4466, UBA4466 sp003149635

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Crocinitomicaceae, Fluviicola

Scaffolds: 19

Genes: 3,260 Protein-coding: 3,198 RNAs: 38 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
QCWI01000001.1 MAG: Fluviicola sp. XM-24bin1 scaffold00004, whole genome shotgun sequence 487,976
QCWI01000002.1 MAG: Fluviicola sp. XM-24bin1 scaffold00006, whole genome shotgun sequence 357,017
QCWI01000003.1 MAG: Fluviicola sp. XM-24bin1 scaffold00007, whole genome shotgun sequence 313,709
QCWI01000004.1 MAG: Fluviicola sp. XM-24bin1 scaffold00008, whole genome shotgun sequence 308,714
QCWI01000005.1 MAG: Fluviicola sp. XM-24bin1 scaffold00010, whole genome shotgun sequence 291,031
QCWI01000006.1 MAG: Fluviicola sp. XM-24bin1 scaffold00011, whole genome shotgun sequence 249,676
QCWI01000007.1 MAG: Fluviicola sp. XM-24bin1 scaffold00012, whole genome shotgun sequence 243,321
QCWI01000008.1 MAG: Fluviicola sp. XM-24bin1 scaffold00014, whole genome shotgun sequence 203,154
QCWI01000009.1 MAG: Fluviicola sp. XM-24bin1 scaffold00015, whole genome shotgun sequence 195,208
QCWI01000010.1 MAG: Fluviicola sp. XM-24bin1 scaffold00016, whole genome shotgun sequence 180,002
QCWI01000011.1 MAG: Fluviicola sp. XM-24bin1 scaffold00020, whole genome shotgun sequence 144,464
QCWI01000012.1 MAG: Fluviicola sp. XM-24bin1 scaffold00023, whole genome shotgun sequence 132,579
QCWI01000013.1 MAG: Fluviicola sp. XM-24bin1 scaffold00024, whole genome shotgun sequence 118,196
QCWI01000014.1 MAG: Fluviicola sp. XM-24bin1 scaffold00027, whole genome shotgun sequence 106,834
QCWI01000015.1 MAG: Fluviicola sp. XM-24bin1 scaffold00029, whole genome shotgun sequence 94,190
QCWI01000016.1 MAG: Fluviicola sp. XM-24bin1 scaffold00044, whole genome shotgun sequence 69,081
QCWI01000017.1 MAG: Fluviicola sp. XM-24bin1 scaffold00058, whole genome shotgun sequence 50,319
QCWI01000018.1 MAG: Fluviicola sp. XM-24bin1 scaffold00066, whole genome shotgun sequence 44,682
QCWI01000019.1 MAG: Fluviicola sp. XM-24bin1 scaffold00073, whole genome shotgun sequence 39,912

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory