fast.genomicscompare 6,575 genera of bacteria & archaea

 

Aquicoccus porphyridii AsT-22

Genome identifier: GCA_003258925.1

NCBI assembly name: ASM325892v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Aquicoccus, Aquicoccus porphyridii

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae

Scaffolds: 37

Genes: 4,301 Protein-coding: 4,151 RNAs: 47 pseudogenes: 103

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
QLIW01000001.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_1, whole genome shotgun sequence 639,565
QLIW01000002.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_2, whole genome shotgun sequence 510,297
QLIW01000003.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_3, whole genome shotgun sequence 428,675
QLIW01000004.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_4, whole genome shotgun sequence 419,792
QLIW01000005.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_5, whole genome shotgun sequence 332,089
QLIW01000006.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_6, whole genome shotgun sequence 282,204
QLIW01000007.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_7, whole genome shotgun sequence 228,708
QLIW01000008.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_8, whole genome shotgun sequence 225,658
QLIW01000009.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_9, whole genome shotgun sequence 203,727
QLIW01000010.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_10, whole genome shotgun sequence 181,032
QLIW01000011.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_11, whole genome shotgun sequence 179,410
QLIW01000012.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_12, whole genome shotgun sequence 136,842
QLIW01000013.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_13, whole genome shotgun sequence 133,142
QLIW01000014.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_14, whole genome shotgun sequence 85,708
QLIW01000015.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_15, whole genome shotgun sequence 65,319
QLIW01000016.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_16, whole genome shotgun sequence 60,908
QLIW01000017.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_17, whole genome shotgun sequence 45,583
QLIW01000018.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_18, whole genome shotgun sequence 30,316
QLIW01000019.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_19, whole genome shotgun sequence 29,590
QLIW01000020.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_20, whole genome shotgun sequence 27,554
QLIW01000021.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_21, whole genome shotgun sequence 20,775
QLIW01000022.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_22, whole genome shotgun sequence 19,467
QLIW01000023.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_23, whole genome shotgun sequence 17,228
QLIW01000024.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_24, whole genome shotgun sequence 16,582
QLIW01000025.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_25, whole genome shotgun sequence 16,281
QLIW01000026.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_26, whole genome shotgun sequence 15,190
QLIW01000027.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_27, whole genome shotgun sequence 15,068
QLIW01000028.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_28, whole genome shotgun sequence 12,034
QLIW01000029.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_29, whole genome shotgun sequence 5,569
QLIW01000030.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_30, whole genome shotgun sequence 3,601
QLIW01000031.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_31, whole genome shotgun sequence 2,164
QLIW01000032.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_32, whole genome shotgun sequence 1,930
QLIW01000033.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_33, whole genome shotgun sequence 1,698
QLIW01000034.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_34, whole genome shotgun sequence 1,320
QLIW01000035.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_35, whole genome shotgun sequence 1,265
QLIW01000036.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_36, whole genome shotgun sequence 1,191
QLIW01000037.1 Rhodobacteraceae bacterium AsT-22 2-AsT-22_37, whole genome shotgun sequence 1,106

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory