fast.genomicscompare 6,575 genera of bacteria & archaea

 

Tokpelaia_A sp003331045 JSC189

Genome identifier: GCA_003331045.1

NCBI assembly name: ASM333104v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Tokpelaia_A, Tokpelaia_A sp003331045

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Candidatus Tokpelaia

Scaffolds: 39

Genes: 1,351 Protein-coding: 1,277 RNAs: 74 pseudogenes: 0

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
QENA01000001.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_1, whole genome shotgun sequence 230,662
QENA01000002.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_10, whole genome shotgun sequence 62,076
QENA01000003.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_11, whole genome shotgun sequence 60,991
QENA01000004.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_12, whole genome shotgun sequence 54,894
QENA01000005.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_13, whole genome shotgun sequence 47,246
QENA01000006.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_14, whole genome shotgun sequence 44,954
QENA01000007.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_15, whole genome shotgun sequence 41,744
QENA01000008.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_16, whole genome shotgun sequence 25,155
QENA01000009.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_17, whole genome shotgun sequence 18,793
QENA01000010.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_18, whole genome shotgun sequence 13,869
QENA01000011.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_19, whole genome shotgun sequence 13,703
QENA01000012.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_2, whole genome shotgun sequence 177,888
QENA01000013.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_20, whole genome shotgun sequence 12,852
QENA01000014.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_21, whole genome shotgun sequence 11,306
QENA01000015.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_22, whole genome shotgun sequence 11,255
QENA01000016.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_23, whole genome shotgun sequence 8,858
QENA01000017.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_24, whole genome shotgun sequence 8,460
QENA01000018.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_25, whole genome shotgun sequence 7,613
QENA01000019.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_26, whole genome shotgun sequence 7,131
QENA01000020.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_27, whole genome shotgun sequence 6,428
QENA01000021.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_28, whole genome shotgun sequence 5,901
QENA01000022.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_29, whole genome shotgun sequence 4,306
QENA01000023.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_3, whole genome shotgun sequence 129,786
QENA01000024.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_30, whole genome shotgun sequence 4,119
QENA01000025.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_31, whole genome shotgun sequence 4,107
QENA01000026.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_32, whole genome shotgun sequence 3,311
QENA01000027.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_33, whole genome shotgun sequence 2,844
QENA01000028.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_34, whole genome shotgun sequence 2,656
QENA01000029.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_35, whole genome shotgun sequence 2,607
QENA01000030.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_36, whole genome shotgun sequence 2,178
QENA01000031.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_37, whole genome shotgun sequence 1,884
QENA01000032.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_38, whole genome shotgun sequence 981
QENA01000033.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_39, whole genome shotgun sequence 974
QENA01000034.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_4, whole genome shotgun sequence 126,508
QENA01000035.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_5, whole genome shotgun sequence 88,320
QENA01000036.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_6, whole genome shotgun sequence 76,891
QENA01000037.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_7, whole genome shotgun sequence 71,832
QENA01000038.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_8, whole genome shotgun sequence 71,235
QENA01000039.1 MAG: Candidatus Tokpelaia sp. JSC189 JSC189_contig_9, whole genome shotgun sequence 65,734

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory