fast.genomicscompare 6,575 genera of bacteria & archaea

 

PXYB01 sp003352285 MA_CRA_1

Genome identifier: GCA_003352285.1

NCBI assembly name: ASM335228v1

GTDB taxonomy: Archaea, Thermoproteota, Nitrososphaeria, Nitrososphaerales, Nitrosopumilaceae, PXYB01, PXYB01 sp003352285

NCBI taxonomy: Archaea, Thermoproteota

Scaffolds: 5

Genes: 1,956 Protein-coding: 1,898 RNAs: 47 pseudogenes: 11

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
QQVN01000001.1 MAG: Crenarchaeota archaeon isolate MA_CRA_1 c_000000000582, whole genome shotgun sequence 7,679
QQVN01000002.1 MAG: Crenarchaeota archaeon isolate MA_CRA_1 c_000000000012, whole genome shotgun sequence 266,192
QQVN01000003.1 MAG: Crenarchaeota archaeon isolate MA_CRA_1 c_000000000004, whole genome shotgun sequence 622,811
QQVN01000004.1 MAG: Crenarchaeota archaeon isolate MA_CRA_1 c_000000000034, whole genome shotgun sequence 171,305
QQVN01000005.1 MAG: Crenarchaeota archaeon isolate MA_CRA_1 c_000000000005, whole genome shotgun sequence 621,016

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory