fast.genomicscompare 6,575 genera of bacteria & archaea

 

Choladousia sp003612585 1XD42-54

Genome identifier: GCA_003612585.1

NCBI assembly name: ASM361258v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Choladousia, Choladousia sp003612585

NCBI taxonomy: Bacteria

Scaffolds: 34

Genes: 3,360 Protein-coding: 3,210 RNAs: 56 pseudogenes: 94

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
RAZH01000001.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold1_1, whole genome shotgun sequence 717,765
RAZH01000002.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold2_1, whole genome shotgun sequence 399,781
RAZH01000003.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold3_1, whole genome shotgun sequence 360,977
RAZH01000004.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold4_1, whole genome shotgun sequence 357,956
RAZH01000005.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold5_1, whole genome shotgun sequence 244,200
RAZH01000006.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold6_1, whole genome shotgun sequence 236,513
RAZH01000007.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold7_1, whole genome shotgun sequence 217,854
RAZH01000008.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold8_1, whole genome shotgun sequence 193,080
RAZH01000009.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold9_1, whole genome shotgun sequence 182,002
RAZH01000010.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold10_1, whole genome shotgun sequence 171,209
RAZH01000011.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold11_1, whole genome shotgun sequence 100,348
RAZH01000012.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold12_1, whole genome shotgun sequence 92,089
RAZH01000013.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold13_1, whole genome shotgun sequence 88,190
RAZH01000014.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold14_1, whole genome shotgun sequence 85,802
RAZH01000015.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold15_1, whole genome shotgun sequence 37,938
RAZH01000016.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold16_1, whole genome shotgun sequence 34,225
RAZH01000017.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold17_1, whole genome shotgun sequence 29,700
RAZH01000018.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold18_1, whole genome shotgun sequence 25,353
RAZH01000019.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold19_1, whole genome shotgun sequence 18,759
RAZH01000020.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold20_1, whole genome shotgun sequence 17,967
RAZH01000021.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold21_1, whole genome shotgun sequence 17,485
RAZH01000022.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold22_1, whole genome shotgun sequence 15,314
RAZH01000023.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold23_1, whole genome shotgun sequence 14,896
RAZH01000024.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold24_1, whole genome shotgun sequence 14,820
RAZH01000025.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold25_1, whole genome shotgun sequence 5,742
RAZH01000026.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold26_1, whole genome shotgun sequence 1,950
RAZH01000027.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold26_2, whole genome shotgun sequence 2,951
RAZH01000028.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold27_1, whole genome shotgun sequence 3,599
RAZH01000029.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold28_1, whole genome shotgun sequence 2,210
RAZH01000030.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold29_1, whole genome shotgun sequence 1,830
RAZH01000031.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold30_1, whole genome shotgun sequence 1,699
RAZH01000032.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold31_1, whole genome shotgun sequence 1,285
RAZH01000033.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold32_1, whole genome shotgun sequence 602
RAZH01000034.1 Bacterium 1XD42-54 strain 1XD42-54 Scaffold33_1, whole genome shotgun sequence 501

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory