fast.genomicscompare 6,575 genera of bacteria & archaea

 

CCMM004 sp004005435 CCMM004

Genome identifier: GCA_004005435.1

NCBI assembly name: ASM400543v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, CCMM004, CCMM004 sp004005435

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae

Scaffolds: 22

Genes: 4,228 Protein-coding: 4,135 RNAs: 48 pseudogenes: 45

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
RZWH01000001.1 Rhodobacteraceae bacterium CCMM004 NODE_1_length_990893_cov_88.820587, whole genome shotgun sequence 990,893
RZWH01000002.1 Rhodobacteraceae bacterium CCMM004 NODE_2_length_929227_cov_84.837293, whole genome shotgun sequence 929,227
RZWH01000003.1 Rhodobacteraceae bacterium CCMM004 NODE_3_length_772942_cov_79.671479, whole genome shotgun sequence 772,942
RZWH01000004.1 Rhodobacteraceae bacterium CCMM004 NODE_4_length_408755_cov_91.134198, whole genome shotgun sequence 408,755
RZWH01000005.1 Rhodobacteraceae bacterium CCMM004 NODE_5_length_330836_cov_89.709847, whole genome shotgun sequence 330,836
RZWH01000006.1 Rhodobacteraceae bacterium CCMM004 NODE_6_length_229635_cov_83.053862, whole genome shotgun sequence 229,635
RZWH01000007.1 Rhodobacteraceae bacterium CCMM004 NODE_7_length_198710_cov_79.897401, whole genome shotgun sequence 198,710
RZWH01000008.1 Rhodobacteraceae bacterium CCMM004 NODE_8_length_188323_cov_93.953316, whole genome shotgun sequence 188,323
RZWH01000009.1 Rhodobacteraceae bacterium CCMM004 NODE_9_length_86073_cov_94.867124, whole genome shotgun sequence 86,073
RZWH01000010.1 Rhodobacteraceae bacterium CCMM004 NODE_10_length_85168_cov_91.691335, whole genome shotgun sequence 85,168
RZWH01000011.1 Rhodobacteraceae bacterium CCMM004 NODE_11_length_75924_cov_42.577167, whole genome shotgun sequence 75,924
RZWH01000012.1 Rhodobacteraceae bacterium CCMM004 NODE_12_length_24570_cov_86.378952, whole genome shotgun sequence 24,570
RZWH01000013.1 Rhodobacteraceae bacterium CCMM004 NODE_13_length_18660_cov_19.679594, whole genome shotgun sequence 18,660
RZWH01000014.1 Rhodobacteraceae bacterium CCMM004 NODE_14_length_10836_cov_51.004573, whole genome shotgun sequence 10,836
RZWH01000015.1 Rhodobacteraceae bacterium CCMM004 NODE_15_length_10198_cov_89.253548, whole genome shotgun sequence 10,198
RZWH01000016.1 Rhodobacteraceae bacterium CCMM004 NODE_16_length_8000_cov_88.531413, whole genome shotgun sequence 8,000
RZWH01000017.1 Rhodobacteraceae bacterium CCMM004 NODE_17_length_7213_cov_86.137902, whole genome shotgun sequence 7,213
RZWH01000018.1 Rhodobacteraceae bacterium CCMM004 NODE_18_length_2351_cov_89.841704, whole genome shotgun sequence 2,351
RZWH01000019.1 Rhodobacteraceae bacterium CCMM004 NODE_19_length_2221_cov_81.945238, whole genome shotgun sequence 2,221
RZWH01000020.1 Rhodobacteraceae bacterium CCMM004 NODE_20_length_1454_cov_160.746437, whole genome shotgun sequence 1,454
RZWH01000021.1 Rhodobacteraceae bacterium CCMM004 NODE_21_length_1237_cov_237.588710, whole genome shotgun sequence 1,237
RZWH01000022.1 Rhodobacteraceae bacterium CCMM004 NODE_22_length_1113_cov_160.944556, whole genome shotgun sequence 1,113

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory