fast.genomicscompare 6,575 genera of bacteria & archaea

 

LSUCC0057 sp004535795 LSUCC0057

Genome identifier: GCA_004535795.1

NCBI assembly name: ASM453579v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Porticoccaceae, LSUCC0057, LSUCC0057 sp004535795

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Porticoccaceae

Scaffolds: 13

Genes: 2,017 Protein-coding: 1,958 RNAs: 53 pseudogenes: 6

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
SPIA01000001.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_0, whole genome shotgun sequence 1,125,525
SPIA01000002.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_1, whole genome shotgun sequence 500,521
SPIA01000003.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_2, whole genome shotgun sequence 357,920
SPIA01000004.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_3, whole genome shotgun sequence 160,288
SPIA01000005.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_4, whole genome shotgun sequence 25,454
SPIA01000006.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_5, whole genome shotgun sequence 23,228
SPIA01000007.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_6, whole genome shotgun sequence 3,525
SPIA01000008.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_7, whole genome shotgun sequence 2,136
SPIA01000009.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_8, whole genome shotgun sequence 1,211
SPIA01000010.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_9, whole genome shotgun sequence 1,057
SPIA01000011.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_10, whole genome shotgun sequence 931
SPIA01000012.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_11, whole genome shotgun sequence 810
SPIA01000013.1 Gammaproteobacteria bacterium LSUCC0057 scaffold_12, whole genome shotgun sequence 504

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory