fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA6156 sp005768725 S2_018_000_R2_106

Genome identifier: GCA_005768725.1

NCBI assembly name: ASM576872v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, UBA1280, UBA6156, UBA6156, UBA6156 sp005768725

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Blastochloridaceae, Blastochloris, Blastochloris viridis

Scaffolds: 10

Genes: 1,791 Protein-coding: 1,728 RNAs: 51 pseudogenes: 12

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
VAFM01000001.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_1, whole genome shotgun sequence 1,023,757
VAFM01000002.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_3, whole genome shotgun sequence 626,606
VAFM01000003.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_2282, whole genome shotgun sequence 35,144
VAFM01000004.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_8358, whole genome shotgun sequence 7,154
VAFM01000005.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_8862, whole genome shotgun sequence 6,520
VAFM01000006.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_15570, whole genome shotgun sequence 2,708
VAFM01000007.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_22659, whole genome shotgun sequence 3,574
VAFM01000008.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_22897, whole genome shotgun sequence 1,790
VAFM01000009.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_27292, whole genome shotgun sequence 1,483
VAFM01000010.1 MAG: Blastochloris viridis isolate S2_018_000_R2_106 S2_018_000_R2_scaffold_32953, whole genome shotgun sequence 2,088

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory