fast.genomicscompare 6,575 genera of bacteria & archaea

 

40CM-4-68-19 sp005879535 DP_5

Genome identifier: GCA_005879535.1

NCBI assembly name: ASM587953v1

GTDB taxonomy: Bacteria, Myxococcota, Myxococcia, Myxococcales, 40CM-4-68-19, 40CM-4-68-19, 40CM-4-68-19 sp005879535

NCBI taxonomy: Bacteria, Deltaproteobacteria

Scaffolds: 118

Genes: 4,855 Protein-coding: 4,661 RNAs: 56 pseudogenes: 138

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
VBKI01000001.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_8085, whole genome shotgun sequence 7,533
VBKI01000002.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_8539_e:808, whole genome shotgun sequence 7,907
VBKI01000003.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_8665, whole genome shotgun sequence 13,890
VBKI01000004.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_8696, whole genome shotgun sequence 7,220
VBKI01000005.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_3101, whole genome shotgun sequence 35,147
VBKI01000006.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_3920, whole genome shotgun sequence 21,671
VBKI01000007.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_32174, whole genome shotgun sequence 3,446
VBKI01000008.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_4091, whole genome shotgun sequence 19,173
VBKI01000009.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_4801, whole genome shotgun sequence 11,311
VBKI01000010.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_4805, whole genome shotgun sequence 16,617
VBKI01000011.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_4896, whole genome shotgun sequence 12,648
VBKI01000012.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_4971, whole genome shotgun sequence 10,466
VBKI01000013.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_12214, whole genome shotgun sequence 7,563
VBKI01000014.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_25738, whole genome shotgun sequence 3,751
VBKI01000015.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_9182, whole genome shotgun sequence 18,358
VBKI01000016.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_9302, whole genome shotgun sequence 9,477
VBKI01000017.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_5783, whole genome shotgun sequence 18,179
VBKI01000018.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_30189, whole genome shotgun sequence 2,519
VBKI01000019.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_15613, whole genome shotgun sequence 5,210
VBKI01000020.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_15734, whole genome shotgun sequence 5,327
VBKI01000021.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_16034, whole genome shotgun sequence 13,311
VBKI01000022.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_16130, whole genome shotgun sequence 4,895
VBKI01000023.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_24932, whole genome shotgun sequence 3,803
VBKI01000024.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_27994, whole genome shotgun sequence 3,399
VBKI01000025.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_11840, whole genome shotgun sequence 10,806
VBKI01000026.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_33436, whole genome shotgun sequence 2,920
VBKI01000027.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_7592, whole genome shotgun sequence 8,054
VBKI01000028.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1016, whole genome shotgun sequence 35,840
VBKI01000029.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1016_e:35840, whole genome shotgun sequence 363
VBKI01000030.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1051, whole genome shotgun sequence 26,796
VBKI01000031.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1247, whole genome shotgun sequence 51,027
VBKI01000032.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1332, whole genome shotgun sequence 42,130
VBKI01000033.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1425, whole genome shotgun sequence 20,581
VBKI01000034.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1464, whole genome shotgun sequence 19,526
VBKI01000035.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1660, whole genome shotgun sequence 18,581
VBKI01000036.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1757, whole genome shotgun sequence 18,703
VBKI01000037.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1762, whole genome shotgun sequence 26,507
VBKI01000038.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_1908, whole genome shotgun sequence 33,458
VBKI01000039.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_2157, whole genome shotgun sequence 24,374
VBKI01000040.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_2415, whole genome shotgun sequence 28,770
VBKI01000041.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_2427, whole genome shotgun sequence 52,968
VBKI01000042.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_2622, whole genome shotgun sequence 26,787
VBKI01000043.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_2667, whole genome shotgun sequence 19,159
VBKI01000044.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_2774, whole genome shotgun sequence 15,465
VBKI01000045.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_2822, whole genome shotgun sequence 25,319
VBKI01000046.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_22414, whole genome shotgun sequence 5,402
VBKI01000047.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_41, whole genome shotgun sequence 298,188
VBKI01000048.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_98, whole genome shotgun sequence 127,257
VBKI01000049.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_120, whole genome shotgun sequence 68,468
VBKI01000050.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_145, whole genome shotgun sequence 87,629
VBKI01000051.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_152, whole genome shotgun sequence 77,707
VBKI01000052.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_157, whole genome shotgun sequence 94,231
VBKI01000053.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_158, whole genome shotgun sequence 208,956
VBKI01000054.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_175, whole genome shotgun sequence 79,781
VBKI01000055.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_175_e:80502, whole genome shotgun sequence 388
VBKI01000056.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_177, whole genome shotgun sequence 336
VBKI01000057.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_177_e:759, whole genome shotgun sequence 70,984
VBKI01000058.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_179, whole genome shotgun sequence 175,058
VBKI01000059.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_180, whole genome shotgun sequence 79,414
VBKI01000060.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_197, whole genome shotgun sequence 94,216
VBKI01000061.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_217, whole genome shotgun sequence 65,636
VBKI01000062.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_244, whole genome shotgun sequence 52,454
VBKI01000063.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_250, whole genome shotgun sequence 84,054
VBKI01000064.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_261, whole genome shotgun sequence 213,294
VBKI01000065.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_271, whole genome shotgun sequence 153,000
VBKI01000066.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_294, whole genome shotgun sequence 171,664
VBKI01000067.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_323, whole genome shotgun sequence 96,812
VBKI01000068.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_332, whole genome shotgun sequence 128,363
VBKI01000069.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_339, whole genome shotgun sequence 57,957
VBKI01000070.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_358, whole genome shotgun sequence 208,627
VBKI01000071.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_413, whole genome shotgun sequence 79,828
VBKI01000072.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_420, whole genome shotgun sequence 50,886
VBKI01000073.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_426, whole genome shotgun sequence 36,873
VBKI01000074.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_435, whole genome shotgun sequence 39,521
VBKI01000075.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_452, whole genome shotgun sequence 36,084
VBKI01000076.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_452_e:36084, whole genome shotgun sequence 508
VBKI01000077.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_456, whole genome shotgun sequence 89,023
VBKI01000078.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_459, whole genome shotgun sequence 93,464
VBKI01000079.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_460, whole genome shotgun sequence 35,816
VBKI01000080.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_485, whole genome shotgun sequence 54,404
VBKI01000081.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_496, whole genome shotgun sequence 47,362
VBKI01000082.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_530, whole genome shotgun sequence 128,840
VBKI01000083.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_534, whole genome shotgun sequence 253
VBKI01000084.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_534_e:287, whole genome shotgun sequence 69,566
VBKI01000085.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_563, whole genome shotgun sequence 62,657
VBKI01000086.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_578, whole genome shotgun sequence 31,783
VBKI01000087.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_582_e:418, whole genome shotgun sequence 57,796
VBKI01000088.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_600, whole genome shotgun sequence 35,657
VBKI01000089.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_602, whole genome shotgun sequence 66,424
VBKI01000090.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_697_e:197.2, whole genome shotgun sequence 38,188
VBKI01000091.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_704, whole genome shotgun sequence 149,708
VBKI01000092.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_710, whole genome shotgun sequence 44,991
VBKI01000093.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_746, whole genome shotgun sequence 103,860
VBKI01000094.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_746_e:104134, whole genome shotgun sequence 581
VBKI01000095.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_776, whole genome shotgun sequence 37,365
VBKI01000096.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_781, whole genome shotgun sequence 41,402
VBKI01000097.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_817, whole genome shotgun sequence 26,290
VBKI01000098.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_853, whole genome shotgun sequence 52,802
VBKI01000099.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_853_e:53268, whole genome shotgun sequence 579
VBKI01000100.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_928, whole genome shotgun sequence 561
VBKI01000101.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_928_e:580, whole genome shotgun sequence 59,178
VBKI01000102.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_986, whole genome shotgun sequence 32,287
VBKI01000103.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_6055, whole genome shotgun sequence 9,244
VBKI01000104.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_6257, whole genome shotgun sequence 15,763
VBKI01000105.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_17112, whole genome shotgun sequence 10,019
VBKI01000106.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_17344, whole genome shotgun sequence 4,987
VBKI01000107.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_17819, whole genome shotgun sequence 5,476
VBKI01000108.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_20943, whole genome shotgun sequence 6,043
VBKI01000109.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_14594, whole genome shotgun sequence 5,400
VBKI01000110.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_41372, whole genome shotgun sequence 2,363
VBKI01000111.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_59591, whole genome shotgun sequence 5,818
VBKI01000112.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_50273, whole genome shotgun sequence 3,775
VBKI01000113.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_46540, whole genome shotgun sequence 2,143
VBKI01000114.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_45825, whole genome shotgun sequence 4,210
VBKI01000115.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_48434, whole genome shotgun sequence 2,203
VBKI01000116.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_52408, whole genome shotgun sequence 2,862
VBKI01000117.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_67155, whole genome shotgun sequence 2,757
VBKI01000118.1 MAG: Deltaproteobacteria bacterium isolate DP_5 14_1009_05_30cm_scaffold_107633, whole genome shotgun sequence 4,300

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory