fast.genomicscompare 6,575 genera of bacteria & archaea

 

Alcalisalibacterium limoincola Alg18-2.2

Genome identifier: GCA_008017755.1

NCBI assembly name: ASM801775v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, Xanthomonadaceae, Alcalisalibacterium, Alcalisalibacterium limoincola

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, Xanthomonadaceae, Alcalisalibacterium limoincola

Scaffolds: 20

Genes: 2,839 Protein-coding: 2,450 RNAs: 53 pseudogenes: 336

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
VRTS01000001.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_1_length_613806_cov_25.9468_ID_1, whole genome shotgun sequence 613,806
VRTS01000002.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_2_length_447981_cov_29.1682_ID_3, whole genome shotgun sequence 447,981
VRTS01000003.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_3_length_386402_cov_27.1604_ID_5, whole genome shotgun sequence 386,402
VRTS01000004.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_4_length_256677_cov_28.5527_ID_7, whole genome shotgun sequence 256,677
VRTS01000005.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_5_length_240313_cov_28.6882_ID_9, whole genome shotgun sequence 240,313
VRTS01000006.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_6_length_213597_cov_23.6366_ID_11, whole genome shotgun sequence 213,597
VRTS01000007.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_7_length_204500_cov_35.2308_ID_13, whole genome shotgun sequence 204,500
VRTS01000008.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_8_length_174238_cov_27.151_ID_15, whole genome shotgun sequence 174,238
VRTS01000009.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_9_length_134789_cov_25.8548_ID_17, whole genome shotgun sequence 134,789
VRTS01000010.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_10_length_113735_cov_28.5402_ID_19, whole genome shotgun sequence 113,735
VRTS01000011.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_11_length_66435_cov_25.5315_ID_21, whole genome shotgun sequence 66,435
VRTS01000012.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_12_length_58697_cov_23.0498_ID_23, whole genome shotgun sequence 58,697
VRTS01000013.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_13_length_53284_cov_32.9801_ID_25, whole genome shotgun sequence 53,284
VRTS01000014.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_14_length_21328_cov_26.5617_ID_27, whole genome shotgun sequence 21,328
VRTS01000015.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_15_length_15881_cov_36.7734_ID_29, whole genome shotgun sequence 15,881
VRTS01000016.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_16_length_12045_cov_78.4687_ID_31, whole genome shotgun sequence 12,045
VRTS01000017.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_17_length_5281_cov_189.735_ID_33, whole genome shotgun sequence 5,281
VRTS01000018.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_18_length_4314_cov_65.1922_ID_35, whole genome shotgun sequence 4,314
VRTS01000019.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_19_length_1258_cov_73.6816_ID_37, whole genome shotgun sequence 1,258
VRTS01000020.1 Alkalisalibacterium limincola strain Alg18-2.2 NODE_20_length_1191_cov_70.1438_ID_39, whole genome shotgun sequence 1,191

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory