fast.genomicscompare 6,575 genera of bacteria & archaea

 

HT1-32 sp009649675 HT1-32

Genome identifier: GCA_009649675.1

NCBI assembly name: ASM964967v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales_A, HT1-32, HT1-32, HT1-32 sp009649675

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 19

Genes: 4,132 Protein-coding: 4,042 RNAs: 56 pseudogenes: 34

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
WJPL01000001.1 Alphaproteobacteria bacterium HT1-32 HT1-32_1, whole genome shotgun sequence 2,439,466
WJPL01000002.1 Alphaproteobacteria bacterium HT1-32 HT1-32_2, whole genome shotgun sequence 845,363
WJPL01000003.1 Alphaproteobacteria bacterium HT1-32 HT1-32_3, whole genome shotgun sequence 801,198
WJPL01000004.1 Alphaproteobacteria bacterium HT1-32 HT1-32_4, whole genome shotgun sequence 186,992
WJPL01000005.1 Alphaproteobacteria bacterium HT1-32 HT1-32_5, whole genome shotgun sequence 101,474
WJPL01000006.1 Alphaproteobacteria bacterium HT1-32 HT1-32_6, whole genome shotgun sequence 11,696
WJPL01000007.1 Alphaproteobacteria bacterium HT1-32 HT1-32_7, whole genome shotgun sequence 6,275
WJPL01000008.1 Alphaproteobacteria bacterium HT1-32 HT1-32_8, whole genome shotgun sequence 5,644
WJPL01000009.1 Alphaproteobacteria bacterium HT1-32 HT1-32_9, whole genome shotgun sequence 3,811
WJPL01000010.1 Alphaproteobacteria bacterium HT1-32 HT1-32_10, whole genome shotgun sequence 3,622
WJPL01000011.1 Alphaproteobacteria bacterium HT1-32 HT1-32_11, whole genome shotgun sequence 3,403
WJPL01000012.1 Alphaproteobacteria bacterium HT1-32 HT1-32_12, whole genome shotgun sequence 2,929
WJPL01000013.1 Alphaproteobacteria bacterium HT1-32 HT1-32_13, whole genome shotgun sequence 2,790
WJPL01000014.1 Alphaproteobacteria bacterium HT1-32 HT1-32_14, whole genome shotgun sequence 2,230
WJPL01000015.1 Alphaproteobacteria bacterium HT1-32 HT1-32_15, whole genome shotgun sequence 1,847
WJPL01000016.1 Alphaproteobacteria bacterium HT1-32 HT1-32_16, whole genome shotgun sequence 1,556
WJPL01000017.1 Alphaproteobacteria bacterium HT1-32 HT1-32_17, whole genome shotgun sequence 1,253
WJPL01000018.1 Alphaproteobacteria bacterium HT1-32 HT1-32_18, whole genome shotgun sequence 1,206
WJPL01000019.1 Alphaproteobacteria bacterium HT1-32 HT1-32_19, whole genome shotgun sequence 1,123

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory