fast.genomicscompare 6,575 genera of bacteria & archaea

 

Profundicola sp009835005 Ap0902

Genome identifier: GCA_009835005.1

NCBI assembly name: ASM983500v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Weeksellaceae, Profundicola, Profundicola sp009835005

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae

Scaffolds: 30

Genes: 2,431 Protein-coding: 2,350 RNAs: 43 pseudogenes: 38

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
WTFG01000001.1 Flavobacteriaceae bacterium Ap0902 1, whole genome shotgun sequence 662,695
WTFG01000002.1 Flavobacteriaceae bacterium Ap0902 2, whole genome shotgun sequence 320,166
WTFG01000003.1 Flavobacteriaceae bacterium Ap0902 3, whole genome shotgun sequence 269,892
WTFG01000004.1 Flavobacteriaceae bacterium Ap0902 4, whole genome shotgun sequence 232,574
WTFG01000005.1 Flavobacteriaceae bacterium Ap0902 5, whole genome shotgun sequence 213,548
WTFG01000006.1 Flavobacteriaceae bacterium Ap0902 6, whole genome shotgun sequence 210,865
WTFG01000007.1 Flavobacteriaceae bacterium Ap0902 7, whole genome shotgun sequence 151,567
WTFG01000008.1 Flavobacteriaceae bacterium Ap0902 8, whole genome shotgun sequence 105,381
WTFG01000009.1 Flavobacteriaceae bacterium Ap0902 9, whole genome shotgun sequence 100,257
WTFG01000010.1 Flavobacteriaceae bacterium Ap0902 10, whole genome shotgun sequence 87,410
WTFG01000011.1 Flavobacteriaceae bacterium Ap0902 11, whole genome shotgun sequence 64,916
WTFG01000012.1 Flavobacteriaceae bacterium Ap0902 12, whole genome shotgun sequence 59,371
WTFG01000013.1 Flavobacteriaceae bacterium Ap0902 13, whole genome shotgun sequence 53,692
WTFG01000014.1 Flavobacteriaceae bacterium Ap0902 14, whole genome shotgun sequence 24,368
WTFG01000015.1 Flavobacteriaceae bacterium Ap0902 15, whole genome shotgun sequence 13,798
WTFG01000016.1 Flavobacteriaceae bacterium Ap0902 16, whole genome shotgun sequence 7,767
WTFG01000017.1 Flavobacteriaceae bacterium Ap0902 17, whole genome shotgun sequence 5,952
WTFG01000018.1 Flavobacteriaceae bacterium Ap0902 18, whole genome shotgun sequence 4,614
WTFG01000019.1 Flavobacteriaceae bacterium Ap0902 19, whole genome shotgun sequence 2,833
WTFG01000020.1 Flavobacteriaceae bacterium Ap0902 20, whole genome shotgun sequence 1,712
WTFG01000021.1 Flavobacteriaceae bacterium Ap0902 21, whole genome shotgun sequence 1,518
WTFG01000022.1 Flavobacteriaceae bacterium Ap0902 22, whole genome shotgun sequence 1,391
WTFG01000023.1 Flavobacteriaceae bacterium Ap0902 23, whole genome shotgun sequence 1,245
WTFG01000024.1 Flavobacteriaceae bacterium Ap0902 24, whole genome shotgun sequence 1,204
WTFG01000025.1 Flavobacteriaceae bacterium Ap0902 25, whole genome shotgun sequence 733
WTFG01000026.1 Flavobacteriaceae bacterium Ap0902 26, whole genome shotgun sequence 699
WTFG01000027.1 Flavobacteriaceae bacterium Ap0902 27, whole genome shotgun sequence 549
WTFG01000028.1 Flavobacteriaceae bacterium Ap0902 28, whole genome shotgun sequence 449
WTFG01000029.1 Flavobacteriaceae bacterium Ap0902 29, whole genome shotgun sequence 371
WTFG01000030.1 Flavobacteriaceae bacterium Ap0902 30, whole genome shotgun sequence 256

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory