fast.genomicscompare 6,575 genera of bacteria & archaea

 

SZUA-592 sp011772965 CS3-C001

Genome identifier: GCA_011772965.1

NCBI assembly name: ASM1177296v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, UBA4486, UBA4486, SZUA-592, SZUA-592 sp011772965

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria

Scaffolds: 90

Genes: 2,257 Protein-coding: 2,127 RNAs: 78 pseudogenes: 52

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
WVYN01000001.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_136945, whole genome shotgun sequence 1,086
WVYN01000002.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_90423, whole genome shotgun sequence 1,610
WVYN01000003.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_161798, whole genome shotgun sequence 1,511
WVYN01000004.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_196511, whole genome shotgun sequence 1,868
WVYN01000005.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_148340, whole genome shotgun sequence 3,559
WVYN01000006.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_170861, whole genome shotgun sequence 4,293
WVYN01000007.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_205463, whole genome shotgun sequence 1,110
WVYN01000008.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_161151, whole genome shotgun sequence 1,099
WVYN01000009.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_221377, whole genome shotgun sequence 1,224
WVYN01000010.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_236900, whole genome shotgun sequence 1,220
WVYN01000011.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_167092, whole genome shotgun sequence 2,909
WVYN01000012.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_214336, whole genome shotgun sequence 1,225
WVYN01000013.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_203676, whole genome shotgun sequence 1,323
WVYN01000014.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_43811, whole genome shotgun sequence 229,237
WVYN01000015.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_69063, whole genome shotgun sequence 235,681
WVYN01000016.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_147785, whole genome shotgun sequence 3,216
WVYN01000017.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_40742, whole genome shotgun sequence 1,051
WVYN01000018.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_24864, whole genome shotgun sequence 7,159
WVYN01000019.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_195424, whole genome shotgun sequence 1,133
WVYN01000020.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_192332, whole genome shotgun sequence 1,951
WVYN01000021.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_27694, whole genome shotgun sequence 198,546
WVYN01000022.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_152515, whole genome shotgun sequence 3,058
WVYN01000023.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_235348, whole genome shotgun sequence 1,321
WVYN01000024.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_91647, whole genome shotgun sequence 102,188
WVYN01000025.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_178862, whole genome shotgun sequence 6,802
WVYN01000026.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_190543, whole genome shotgun sequence 1,113
WVYN01000027.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_143576, whole genome shotgun sequence 1,026
WVYN01000028.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_228138, whole genome shotgun sequence 3,361
WVYN01000029.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_155242, whole genome shotgun sequence 9,855
WVYN01000030.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_126624, whole genome shotgun sequence 36,162
WVYN01000031.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_224819, whole genome shotgun sequence 1,496
WVYN01000032.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_181377, whole genome shotgun sequence 1,320
WVYN01000033.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_139487, whole genome shotgun sequence 54,286
WVYN01000034.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_147186, whole genome shotgun sequence 2,620
WVYN01000035.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_179404, whole genome shotgun sequence 2,803
WVYN01000036.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_115797, whole genome shotgun sequence 47,361
WVYN01000037.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_190879, whole genome shotgun sequence 1,573
WVYN01000038.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_242096, whole genome shotgun sequence 1,318
WVYN01000039.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_153561, whole genome shotgun sequence 15,662
WVYN01000040.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_139552, whole genome shotgun sequence 1,500
WVYN01000041.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_240219, whole genome shotgun sequence 1,181
WVYN01000042.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_149352, whole genome shotgun sequence 1,079
WVYN01000043.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_201137, whole genome shotgun sequence 1,097
WVYN01000044.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_183587, whole genome shotgun sequence 1,343
WVYN01000045.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_111810, whole genome shotgun sequence 23,127
WVYN01000046.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_222065, whole genome shotgun sequence 2,435
WVYN01000047.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_54343, whole genome shotgun sequence 1,337
WVYN01000048.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_84389, whole genome shotgun sequence 52,159
WVYN01000049.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_90961, whole genome shotgun sequence 1,032
WVYN01000050.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_80286, whole genome shotgun sequence 242,122
WVYN01000051.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_77483, whole genome shotgun sequence 62,059
WVYN01000052.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_204654, whole genome shotgun sequence 2,201
WVYN01000053.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_29485, whole genome shotgun sequence 1,163
WVYN01000054.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_182437, whole genome shotgun sequence 1,054
WVYN01000055.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_145172, whole genome shotgun sequence 1,480
WVYN01000056.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_250349, whole genome shotgun sequence 1,101
WVYN01000057.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_125714, whole genome shotgun sequence 1,653
WVYN01000058.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_39949, whole genome shotgun sequence 1,783
WVYN01000059.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_68728, whole genome shotgun sequence 82,277
WVYN01000060.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_120662, whole genome shotgun sequence 60,579
WVYN01000061.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_41252, whole genome shotgun sequence 34,287
WVYN01000062.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_227486, whole genome shotgun sequence 1,239
WVYN01000063.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_132967, whole genome shotgun sequence 27,064
WVYN01000064.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_198200, whole genome shotgun sequence 1,405
WVYN01000065.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_91175, whole genome shotgun sequence 53,488
WVYN01000066.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_156296, whole genome shotgun sequence 2,792
WVYN01000067.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_100139, whole genome shotgun sequence 1,632
WVYN01000068.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_91862, whole genome shotgun sequence 4,011
WVYN01000069.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_103321, whole genome shotgun sequence 1,266
WVYN01000070.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_145661, whole genome shotgun sequence 1,318
WVYN01000071.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_191052, whole genome shotgun sequence 2,188
WVYN01000072.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_155272, whole genome shotgun sequence 8,689
WVYN01000073.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_148884, whole genome shotgun sequence 1,007
WVYN01000074.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_207793, whole genome shotgun sequence 1,618
WVYN01000075.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_153302, whole genome shotgun sequence 2,205
WVYN01000076.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_232339, whole genome shotgun sequence 1,074
WVYN01000077.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_111978, whole genome shotgun sequence 89,163
WVYN01000078.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_139357, whole genome shotgun sequence 1,109
WVYN01000079.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_152094, whole genome shotgun sequence 4,902
WVYN01000080.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_52686, whole genome shotgun sequence 260,026
WVYN01000081.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_34639, whole genome shotgun sequence 5,690
WVYN01000082.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_129291, whole genome shotgun sequence 93,556
WVYN01000083.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_132022, whole genome shotgun sequence 1,849
WVYN01000084.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_229245, whole genome shotgun sequence 1,639
WVYN01000085.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_149954, whole genome shotgun sequence 1,707
WVYN01000086.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_130536, whole genome shotgun sequence 14,277
WVYN01000087.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_216137, whole genome shotgun sequence 3,808
WVYN01000088.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_73550, whole genome shotgun sequence 1,045
WVYN01000089.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_242592, whole genome shotgun sequence 1,430
WVYN01000090.1 MAG: Gammaproteobacteria bacterium isolate CS3-C001 C_merged_R1_(paired)_contig_157244, whole genome shotgun sequence 3,516

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory