fast.genomicscompare 6,575 genera of bacteria & archaea

 

WLXD01 sp012103255 s2_autometa_2-0

Genome identifier: GCA_012103255.1

NCBI assembly name: ASM1210325v1

GTDB taxonomy: Bacteria, Acidobacteriota, UBA890, UBA890, WLXD01, WLXD01, WLXD01 sp012103255

NCBI taxonomy: Bacteria, Acidobacteriota

Scaffolds: 9

Genes: 4,143 Protein-coding: 4,047 RNAs: 54 pseudogenes: 42

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
WLXD01000001.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_1_length_1470802_cov_13.480079, whole genome shotgun sequence 1,470,802
WLXD01000002.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_2_length_1042472_cov_12.301323, whole genome shotgun sequence 1,042,472
WLXD01000003.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_3_length_628496_cov_12.604995, whole genome shotgun sequence 628,496
WLXD01000004.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_4_length_552380_cov_12.913380, whole genome shotgun sequence 552,380
WLXD01000005.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_5_length_383313_cov_12.151297, whole genome shotgun sequence 383,313
WLXD01000006.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_7_length_314749_cov_12.509863, whole genome shotgun sequence 314,749
WLXD01000007.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_8_length_305047_cov_13.127099, whole genome shotgun sequence 305,047
WLXD01000008.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_41_length_106595_cov_12.957771, whole genome shotgun sequence 106,595
WLXD01000009.1 MAG: Acidobacteria bacterium isolate s2_autometa_2-0 NODE_3162_length_11041_cov_2.351750, whole genome shotgun sequence 11,041

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory