fast.genomicscompare 6,575 genera of bacteria & archaea

 

WLWX01 sp012103375 MH-Pat-all_autometa_1-0

Genome identifier: GCA_012103375.1

NCBI assembly name: ASM1210337v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, WLWX01, WLWX01 sp012103375

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae

Scaffolds: 2

Genes: 4,107 Protein-coding: 3,782 RNAs: 49 pseudogenes: 276

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
WLWX01000001.1 MAG: Rhodobacteraceae bacterium isolate MH-Pat-all_autometa_1-0 scf7180000017252.4011077, whole genome shotgun sequence 4,011,077
WLWX01000002.1 MAG: Rhodobacteraceae bacterium isolate MH-Pat-all_autometa_1-0 scf7180000017293.10825, whole genome shotgun sequence 10,825

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory