fast.genomicscompare 6,575 genera of bacteria & archaea

 

UBA2192 sp013177795 Ch3

Genome identifier: GCA_013177795.1

NCBI assembly name: ASM1317779v1

GTDB taxonomy: Bacteria, Desulfobacterota, Syntrophia, Syntrophales, UBA2192, UBA2192, UBA2192 sp013177795

NCBI taxonomy: Bacteria, Thermodesulfobacteriota, Syntrophia, Syntrophales, Syntrophaceae

Scaffolds: 5

Genes: 3,309 Protein-coding: 3,219 RNAs: 54 pseudogenes: 36

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JABLXY010000001.1 MAG: Syntrophaceae bacterium isolate Ch3 Scaffold1, whole genome shotgun sequence 1,026,914
JABLXY010000002.1 MAG: Syntrophaceae bacterium isolate Ch3 Scaffold3, whole genome shotgun sequence 1,053,440
JABLXY010000003.1 MAG: Syntrophaceae bacterium isolate Ch3 Scaffold7, whole genome shotgun sequence 876,706
JABLXY010000004.1 MAG: Syntrophaceae bacterium isolate Ch3 Scaffold13, whole genome shotgun sequence 505,583
JABLXY010000005.1 MAG: Syntrophaceae bacterium isolate Ch3 Scaffold49, whole genome shotgun sequence 2,405

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory