fast.genomicscompare 6,575 genera of bacteria & archaea

 

GCA-2708415 sp013215815 DT_63

Genome identifier: GCA_013215815.1

NCBI assembly name: ASM1321581v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Micavibrionales, Micavibrionaceae, GCA-2708415, GCA-2708415 sp013215815

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria

Scaffolds: 53

Genes: 1,988 Protein-coding: 1,935 RNAs: 41 pseudogenes: 12

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JABSQP010000001.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_1, whole genome shotgun sequence 48,914
JABSQP010000002.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_2, whole genome shotgun sequence 30,158
JABSQP010000003.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_3, whole genome shotgun sequence 146,395
JABSQP010000004.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_4, whole genome shotgun sequence 141,813
JABSQP010000005.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_5, whole genome shotgun sequence 140,558
JABSQP010000006.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_6, whole genome shotgun sequence 129,385
JABSQP010000007.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_7, whole genome shotgun sequence 97,041
JABSQP010000008.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_8, whole genome shotgun sequence 92,860
JABSQP010000009.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_9, whole genome shotgun sequence 71,663
JABSQP010000010.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_10, whole genome shotgun sequence 71,066
JABSQP010000011.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_11, whole genome shotgun sequence 59,271
JABSQP010000012.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_12, whole genome shotgun sequence 58,997
JABSQP010000013.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_13, whole genome shotgun sequence 57,877
JABSQP010000014.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_14, whole genome shotgun sequence 57,292
JABSQP010000015.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_15, whole genome shotgun sequence 55,418
JABSQP010000016.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_16, whole genome shotgun sequence 51,634
JABSQP010000017.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_17, whole genome shotgun sequence 50,675
JABSQP010000018.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_18, whole genome shotgun sequence 42,294
JABSQP010000019.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_19, whole genome shotgun sequence 37,375
JABSQP010000020.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_20, whole genome shotgun sequence 36,562
JABSQP010000021.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_21, whole genome shotgun sequence 35,815
JABSQP010000022.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_22, whole genome shotgun sequence 34,794
JABSQP010000023.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_23, whole genome shotgun sequence 34,195
JABSQP010000024.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_24, whole genome shotgun sequence 31,657
JABSQP010000025.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_25, whole genome shotgun sequence 27,981
JABSQP010000026.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_26, whole genome shotgun sequence 26,192
JABSQP010000027.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_27, whole genome shotgun sequence 22,500
JABSQP010000028.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_28, whole genome shotgun sequence 21,990
JABSQP010000029.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_29, whole genome shotgun sequence 18,995
JABSQP010000030.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_30, whole genome shotgun sequence 18,851
JABSQP010000031.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_31, whole genome shotgun sequence 18,811
JABSQP010000032.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_32, whole genome shotgun sequence 15,551
JABSQP010000033.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_33, whole genome shotgun sequence 15,089
JABSQP010000034.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_34, whole genome shotgun sequence 12,739
JABSQP010000035.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_35, whole genome shotgun sequence 10,740
JABSQP010000036.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_36, whole genome shotgun sequence 9,743
JABSQP010000037.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_37, whole genome shotgun sequence 9,271
JABSQP010000038.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_38, whole genome shotgun sequence 8,378
JABSQP010000039.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_39, whole genome shotgun sequence 7,608
JABSQP010000040.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_40, whole genome shotgun sequence 6,544
JABSQP010000041.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_41, whole genome shotgun sequence 6,153
JABSQP010000042.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_42, whole genome shotgun sequence 5,690
JABSQP010000043.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_43, whole genome shotgun sequence 11,974
JABSQP010000044.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_44, whole genome shotgun sequence 5,496
JABSQP010000045.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_45, whole genome shotgun sequence 5,225
JABSQP010000046.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_46, whole genome shotgun sequence 4,395
JABSQP010000047.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_47, whole genome shotgun sequence 4,371
JABSQP010000048.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_48, whole genome shotgun sequence 3,550
JABSQP010000049.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_49, whole genome shotgun sequence 2,769
JABSQP010000050.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_50, whole genome shotgun sequence 2,491
JABSQP010000051.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_51, whole genome shotgun sequence 2,250
JABSQP010000052.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_52, whole genome shotgun sequence 2,159
JABSQP010000053.1 MAG: Alphaproteobacteria bacterium isolate DT_63 DT-Micavibrionaceae-1_53, whole genome shotgun sequence 1,837

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory