fast.genomicscompare 6,575 genera of bacteria & archaea

 

JABCPE02 sp013333255 T-B-M_MAG_00001

Genome identifier: GCA_013333255.2

NCBI assembly name: ASM1333325v2

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Weeksellaceae, JABCPE02, JABCPE02 sp013333255

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae

Scaffolds: 8

Genes: 1,940 Protein-coding: 1,886 RNAs: 41 pseudogenes: 13

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JABCPE020000001.1 MAG: Flavobacteriaceae bacterium isolate T-B-M_MAG_00001 c_000000000001, whole genome shotgun sequence 404,640
JABCPE020000002.1 MAG: Flavobacteriaceae bacterium isolate T-B-M_MAG_00001 c_000000000002, whole genome shotgun sequence 233,383
JABCPE020000003.1 MAG: Flavobacteriaceae bacterium isolate T-B-M_MAG_00001 c_000000000003, whole genome shotgun sequence 197,274
JABCPE020000004.1 MAG: Flavobacteriaceae bacterium isolate T-B-M_MAG_00001 c_000000000004, whole genome shotgun sequence 380,981
JABCPE020000005.1 MAG: Flavobacteriaceae bacterium isolate T-B-M_MAG_00001 c_000000000005, whole genome shotgun sequence 388,416
JABCPE020000006.1 MAG: Flavobacteriaceae bacterium isolate T-B-M_MAG_00001 c_000000000006, whole genome shotgun sequence 13,458
JABCPE020000007.1 MAG: Flavobacteriaceae bacterium isolate T-B-M_MAG_00001 c_000000000007, whole genome shotgun sequence 231,379
JABCPE020000008.1 MAG: Flavobacteriaceae bacterium isolate T-B-M_MAG_00001 c_000000000008, whole genome shotgun sequence 33,623

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory