fast.genomicscompare 6,575 genera of bacteria & archaea

 

H5-SPI1 sp015075425 H5_SPI1

Genome identifier: GCA_015075425.1

NCBI assembly name: ASM1507542v1

GTDB taxonomy: Bacteria, Spirochaetota, Leptospirae, Leptospirales, Leptonemataceae, H5-SPI1, H5-SPI1 sp015075425

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Spirochaetales

Scaffolds: 4

Genes: 4,088 Protein-coding: 4,019 RNAs: 44 pseudogenes: 25

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JABTUL010000001.1 MAG: Spirochaetales bacterium isolate H5_SPI1 seq001, whole genome shotgun sequence 2,456,361
JABTUL010000002.1 MAG: Spirochaetales bacterium isolate H5_SPI1 seq002, whole genome shotgun sequence 1,073,807
JABTUL010000003.1 MAG: Spirochaetales bacterium isolate H5_SPI1 seq003, whole genome shotgun sequence 348,857
JABTUL010000004.1 MAG: Spirochaetales bacterium isolate H5_SPI1 seq004, whole genome shotgun sequence 249,708

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory