fast.genomicscompare 6,575 genera of bacteria & archaea

 

JADHZC01 sp015657545 MM_Alph2018

Genome identifier: GCA_015657545.1

NCBI assembly name: ASM1565754v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rickettsiales, Rickettsiaceae, JADHZC01, JADHZC01 sp015657545

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rickettsiales, Rickettsiaceae, Rickettsia

Scaffolds: 11

Genes: 886 Protein-coding: 832 RNAs: 41 pseudogenes: 13

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADHZC010000001.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig11, whole genome shotgun sequence 201,587
JADHZC010000002.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig10, whole genome shotgun sequence 54,527
JADHZC010000003.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig9, whole genome shotgun sequence 36,782
JADHZC010000004.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig8, whole genome shotgun sequence 13,334
JADHZC010000005.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig7, whole genome shotgun sequence 50,645
JADHZC010000006.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig3, whole genome shotgun sequence 28,039
JADHZC010000007.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig2, whole genome shotgun sequence 115,481
JADHZC010000008.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig1, whole genome shotgun sequence 21,664
JADHZC010000009.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig0, whole genome shotgun sequence 112,427
JADHZC010000010.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig_2.3, whole genome shotgun sequence 48,841
JADHZC010000011.1 MAG: Rickettsia sp. isolate MM_Alph2018 Contig_1.2, whole genome shotgun sequence 312,213

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory