fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACPAN01 sp016180815 NC_groundwater_232_Ag_S-0.2um_54_10

Genome identifier: GCA_016180815.1

NCBI assembly name: ASM1618081v1

GTDB taxonomy: Bacteria, Elusimicrobiota, Elusimicrobia, JACQPE01, JACQPE01, JACPAN01, JACPAN01 sp016180815

NCBI taxonomy: Bacteria, Elusimicrobiota

Scaffolds: 39

Genes: 2,518 Protein-coding: 2,462 RNAs: 52 pseudogenes: 4

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACPAN010000001.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_5527, whole genome shotgun sequence 9,455
JACPAN010000002.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_37, whole genome shotgun sequence 136,944
JACPAN010000003.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_67, whole genome shotgun sequence 139,073
JACPAN010000004.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_83, whole genome shotgun sequence 127,812
JACPAN010000005.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_88, whole genome shotgun sequence 157,165
JACPAN010000006.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_107, whole genome shotgun sequence 134,876
JACPAN010000007.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_110, whole genome shotgun sequence 121,744
JACPAN010000008.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_126, whole genome shotgun sequence 240,747
JACPAN010000009.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_130, whole genome shotgun sequence 105,504
JACPAN010000010.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_134, whole genome shotgun sequence 157,483
JACPAN010000011.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_162, whole genome shotgun sequence 142,391
JACPAN010000012.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_171, whole genome shotgun sequence 72,394
JACPAN010000013.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_223, whole genome shotgun sequence 180,152
JACPAN010000014.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_261, whole genome shotgun sequence 79,803
JACPAN010000015.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_265, whole genome shotgun sequence 220,806
JACPAN010000016.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_288, whole genome shotgun sequence 115,728
JACPAN010000017.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_294, whole genome shotgun sequence 64,875
JACPAN010000018.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_323, whole genome shotgun sequence 51,075
JACPAN010000019.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_409, whole genome shotgun sequence 47,886
JACPAN010000020.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_445, whole genome shotgun sequence 82,730
JACPAN010000021.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_478, whole genome shotgun sequence 41,354
JACPAN010000022.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_501, whole genome shotgun sequence 63,450
JACPAN010000023.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_503, whole genome shotgun sequence 40,487
JACPAN010000024.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_514, whole genome shotgun sequence 40,915
JACPAN010000025.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_748, whole genome shotgun sequence 32,105
JACPAN010000026.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_798, whole genome shotgun sequence 31,595
JACPAN010000027.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_940, whole genome shotgun sequence 27,870
JACPAN010000028.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_967, whole genome shotgun sequence 56,987
JACPAN010000029.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_6055, whole genome shotgun sequence 8,890
JACPAN010000030.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_13685, whole genome shotgun sequence 4,942
JACPAN010000031.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_1984, whole genome shotgun sequence 18,149
JACPAN010000032.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_2025, whole genome shotgun sequence 17,925
JACPAN010000033.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_2172, whole genome shotgun sequence 17,220
JACPAN010000034.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_2494, whole genome shotgun sequence 15,810
JACPAN010000035.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_2820, whole genome shotgun sequence 14,618
JACPAN010000036.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_11862, whole genome shotgun sequence 5,489
JACPAN010000037.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_3881, whole genome shotgun sequence 12,060
JACPAN010000038.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_17222, whole genome shotgun sequence 4,208
JACPAN010000039.1 MAG: Elusimicrobia bacterium isolate NC_groundwater_232_Ag_S-0.2um_54_10 S5_GD2017_2_S2_scaffold_14691, whole genome shotgun sequence 4,699

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory