fast.genomicscompare 6,575 genera of bacteria & archaea

 

JACQXA01 sp016208975 NC_groundwater_1503_Pr4_B-0.1um_56_23

Genome identifier: GCA_016208975.1

NCBI assembly name: ASM1620897v1

GTDB taxonomy: Bacteria, Nitrospinota, UBA7883, UBA7883, JACRLM01, JACQXA01, JACQXA01 sp016208975

NCBI taxonomy: Bacteria, Nitrospinota

Scaffolds: 4

Genes: 2,858 Protein-coding: 2,799 RNAs: 54 pseudogenes: 5

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACQXA010000001.1 MAG: Nitrospinae bacterium isolate NC_groundwater_1503_Pr4_B-0.1um_56_23 SR1-18-B1_scaffold_22243, whole genome shotgun sequence 378,595
JACQXA010000002.1 MAG: Nitrospinae bacterium isolate NC_groundwater_1503_Pr4_B-0.1um_56_23 SR1-18-B1_scaffold_122929, whole genome shotgun sequence 210,419
JACQXA010000003.1 MAG: Nitrospinae bacterium isolate NC_groundwater_1503_Pr4_B-0.1um_56_23 SR1-18-B1_scaffold_121571, whole genome shotgun sequence 177,454
JACQXA010000004.1 MAG: Nitrospinae bacterium isolate NC_groundwater_1503_Pr4_B-0.1um_56_23 SR1-18-B1_scaffold_55057, whole genome shotgun sequence 2,207,735

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory