fast.genomicscompare 6,575 genera of bacteria & archaea

 

PNNN01 sp016214905 NC_groundwater_1911_Pr3_S2p5_40_15

Genome identifier: GCA_016214905.1

NCBI assembly name: ASM1621490v1

GTDB taxonomy: Bacteria, Bacteroidota, UBA10030, UBA10030, SZUA-254, PNNN01, PNNN01 sp016214905

NCBI taxonomy: Bacteria, Ignavibacteriota, Ignavibacteria, Ignavibacteriales

Scaffolds: 10

Genes: 2,803 Protein-coding: 2,743 RNAs: 52 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACRMQ010000001.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_70309, whole genome shotgun sequence 172,346
JACRMQ010000002.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_129217, whole genome shotgun sequence 89,236
JACRMQ010000003.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_80491, whole genome shotgun sequence 138,434
JACRMQ010000004.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_38818, whole genome shotgun sequence 236,505
JACRMQ010000005.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_93335, whole genome shotgun sequence 223,336
JACRMQ010000006.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_30241, whole genome shotgun sequence 793,082
JACRMQ010000007.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_33940, whole genome shotgun sequence 1,376,773
JACRMQ010000008.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_77247, whole genome shotgun sequence 158,750
JACRMQ010000009.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_44017, whole genome shotgun sequence 123,961
JACRMQ010000010.1 MAG: Ignavibacteriales bacterium isolate NC_groundwater_1911_Pr3_S2p5_40_15 SR2-18-S2p5_coassembly_scaffold_283226, whole genome shotgun sequence 3,173

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory