fast.genomicscompare 6,575 genera of bacteria & archaea

 

FEN-1279 sp016218085 NC_groundwater_1711_Pr3_B-0.1um_37_88

Genome identifier: GCA_016218085.1

NCBI assembly name: ASM1621808v1

GTDB taxonomy: Bacteria, Bacteroidota, Ignavibacteria, SJA-28, B-1AR, FEN-1279, FEN-1279 sp016218085

NCBI taxonomy: Bacteria, Ignavibacteriota

Scaffolds: 22

Genes: 2,892 Protein-coding: 2,829 RNAs: 55 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JACREY010000001.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_42458, whole genome shotgun sequence 48,599
JACREY010000002.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_180317, whole genome shotgun sequence 38,672
JACREY010000003.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_279743, whole genome shotgun sequence 206,704
JACREY010000004.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_299994, whole genome shotgun sequence 35,040
JACREY010000005.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_469299, whole genome shotgun sequence 146,491
JACREY010000006.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_607827, whole genome shotgun sequence 4,384
JACREY010000007.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_637849, whole genome shotgun sequence 173,617
JACREY010000008.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_702115, whole genome shotgun sequence 445,509
JACREY010000009.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_730968, whole genome shotgun sequence 62,611
JACREY010000010.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1122041, whole genome shotgun sequence 5,707
JACREY010000011.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1136406, whole genome shotgun sequence 207,864
JACREY010000012.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1404476, whole genome shotgun sequence 588,354
JACREY010000013.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1440166, whole genome shotgun sequence 50,173
JACREY010000014.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1666028, whole genome shotgun sequence 27,371
JACREY010000015.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1762265, whole genome shotgun sequence 302,060
JACREY010000016.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1938665, whole genome shotgun sequence 9,375
JACREY010000017.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1906890, whole genome shotgun sequence 276,036
JACREY010000018.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1986406, whole genome shotgun sequence 11,129
JACREY010000019.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_1963488, whole genome shotgun sequence 9,841
JACREY010000020.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_3642332, whole genome shotgun sequence 318,192
JACREY010000021.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_3597542, whole genome shotgun sequence 199,345
JACREY010000022.1 MAG: Ignavibacteriae bacterium isolate NC_groundwater_1711_Pr3_B-0.1um_37_88 SR-2_scaffold_141_3858381, whole genome shotgun sequence 147,831

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory