fast.genomicscompare 6,575 genera of bacteria & archaea

 

CAINDZ01 sp016703265 Aved_18-Q3-R54-62_BATAC.392

Genome identifier: GCA_016703265.1

NCBI assembly name: ASM1670326v1

GTDB taxonomy: Bacteria, Krumholzibacteriota, Krumholzibacteria, LZORAL124-64-63, LZORAL124-64-63, CAINDZ01, CAINDZ01 sp016703265

NCBI taxonomy: Bacteria

Scaffolds: 21

Genes: 4,060 Protein-coding: 3,872 RNAs: 58 pseudogenes: 130

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJCK010000001.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00003452-10-8501080, whole genome shotgun sequence 852,585
JADJCK010000002.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00003452-10-1393490, whole genome shotgun sequence 139,358
JADJCK010000003.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00004929-10-6904720, whole genome shotgun sequence 694,353
JADJCK010000004.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00005993-10-5503430, whole genome shotgun sequence 548,398
JADJCK010000005.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00006180-10-5375090, whole genome shotgun sequence 537,208
JADJCK010000006.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00007027-10-4922810, whole genome shotgun sequence 492,052
JADJCK010000007.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00007370-10-4605250, whole genome shotgun sequence 462,596
JADJCK010000008.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00007873-10-184740, whole genome shotgun sequence 18,500
JADJCK010000009.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00009037-10-3791970, whole genome shotgun sequence 378,998
JADJCK010000010.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00017464-10-113340, whole genome shotgun sequence 11,367
JADJCK010000011.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00019991-10-1586440, whole genome shotgun sequence 158,463
JADJCK010000012.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00021708-10-1357390, whole genome shotgun sequence 135,716
JADJCK010000013.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00029116-10-125890, whole genome shotgun sequence 12,626
JADJCK010000014.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00029727-10-933010, whole genome shotgun sequence 93,311
JADJCK010000015.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00031624-10-947770, whole genome shotgun sequence 94,740
JADJCK010000016.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00034524-10-667180, whole genome shotgun sequence 66,815
JADJCK010000017.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00052549-10-281270, whole genome shotgun sequence 28,012
JADJCK010000018.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00063446-10-279100, whole genome shotgun sequence 27,934
JADJCK010000019.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00160157-10-41150, whole genome shotgun sequence 4,133
JADJCK010000020.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig00352335-10-96020, whole genome shotgun sequence 9,614
JADJCK010000021.1 MAG: bacterium isolate Aved_18-Q3-R54-62_BATAC.392 tig01608577-10-100150, whole genome shotgun sequence 9,631

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory