fast.genomicscompare 6,575 genera of bacteria & archaea

 

CADEED01 sp016703895 AalW_18-Q3-R10-53_MAXAC.296

Genome identifier: GCA_016703895.1

NCBI assembly name: ASM1670389v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Steroidobacterales, Steroidobacteraceae, CADEED01, CADEED01 sp016703895

NCBI taxonomy: Bacteria, Pseudomonadota

Scaffolds: 31

Genes: 3,916 Protein-coding: 3,590 RNAs: 51 pseudogenes: 275

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADJBE010000001.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00002353-10-9389170, whole genome shotgun sequence 938,555
JADJBE010000002.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00008534-10-3612840, whole genome shotgun sequence 361,066
JADJBE010000003.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00008864-10-3551010, whole genome shotgun sequence 355,076
JADJBE010000004.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00011145-10-2923040, whole genome shotgun sequence 291,771
JADJBE010000005.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00011950-10-2604600, whole genome shotgun sequence 260,813
JADJBE010000006.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00012108-10-2556730, whole genome shotgun sequence 255,799
JADJBE010000007.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00018774-10-1996060, whole genome shotgun sequence 199,728
JADJBE010000008.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00023285-10-1304140, whole genome shotgun sequence 130,491
JADJBE010000009.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00032054-10-433880, whole genome shotgun sequence 43,447
JADJBE010000010.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00032588-10-1095080, whole genome shotgun sequence 109,353
JADJBE010000011.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00033335-10-490200, whole genome shotgun sequence 49,097
JADJBE010000012.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00036093-10-625610, whole genome shotgun sequence 62,634
JADJBE010000013.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00044083-10-504780, whole genome shotgun sequence 50,563
JADJBE010000014.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00047382-10-371570, whole genome shotgun sequence 37,296
JADJBE010000015.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00049121-10-372490, whole genome shotgun sequence 37,205
JADJBE010000016.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00049443-10-119760, whole genome shotgun sequence 11,359
JADJBE010000017.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00063203-10-335980, whole genome shotgun sequence 33,634
JADJBE010000018.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00077027-10-220290, whole genome shotgun sequence 21,829
JADJBE010000019.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00095791-10-68040, whole genome shotgun sequence 6,861
JADJBE010000020.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00123425-10-209080, whole genome shotgun sequence 20,939
JADJBE010000021.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00128707-10-107760, whole genome shotgun sequence 10,814
JADJBE010000022.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00136094-10-53970, whole genome shotgun sequence 5,398
JADJBE010000023.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00191528-10-48380, whole genome shotgun sequence 4,861
JADJBE010000024.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00395645-10-53860, whole genome shotgun sequence 5,429
JADJBE010000025.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00396869-10-74590, whole genome shotgun sequence 7,481
JADJBE010000026.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00405950-10-4948010, whole genome shotgun sequence 495,085
JADJBE010000027.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig00405951-10-402170, whole genome shotgun sequence 40,150
JADJBE010000028.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig01690231-10-343320, whole genome shotgun sequence 34,296
JADJBE010000029.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig01690650-10-99600, whole genome shotgun sequence 9,957
JADJBE010000030.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig01690651-10-362860, whole genome shotgun sequence 36,123
JADJBE010000031.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_MAXAC.296 tig01693793-10-66290, whole genome shotgun sequence 6,498

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory