fast.genomicscompare 6,575 genera of bacteria & archaea

 

RPQJ01 sp016704655 AalW_18-Q3-R10-53_BAT3C.245

Genome identifier: GCA_016704655.1

NCBI assembly name: ASM1670465v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Steroidobacterales, Steroidobacteraceae, RPQJ01, RPQJ01 sp016704655

NCBI taxonomy: Bacteria, Pseudomonadota

Scaffolds: 22

Genes: 3,782 Protein-coding: 3,441 RNAs: 56 pseudogenes: 285

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
JADIZR010000001.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00006291-10-4957850, whole genome shotgun sequence 490,585
JADIZR010000002.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00007160-10-3912580, whole genome shotgun sequence 395,496
JADIZR010000003.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00010488-10-2929570, whole genome shotgun sequence 292,151
JADIZR010000004.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00010748-10-2328670, whole genome shotgun sequence 232,583
JADIZR010000005.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00010978-10-2850530, whole genome shotgun sequence 283,628
JADIZR010000006.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00011158-10-2574330, whole genome shotgun sequence 256,806
JADIZR010000007.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00012629-10-2904210, whole genome shotgun sequence 290,129
JADIZR010000008.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00013462-10-2443220, whole genome shotgun sequence 244,086
JADIZR010000009.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00016805-10-1845200, whole genome shotgun sequence 187,383
JADIZR010000010.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00017214-10-1730890, whole genome shotgun sequence 172,609
JADIZR010000011.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00017718-10-1786190, whole genome shotgun sequence 179,290
JADIZR010000012.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00017802-10-1715250, whole genome shotgun sequence 171,338
JADIZR010000013.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00018523-10-153830, whole genome shotgun sequence 15,395
JADIZR010000014.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00021132-10-1159820, whole genome shotgun sequence 115,815
JADIZR010000015.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00021629-10-1140670, whole genome shotgun sequence 114,218
JADIZR010000016.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00028729-10-917580, whole genome shotgun sequence 91,855
JADIZR010000017.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00032405-10-789910, whole genome shotgun sequence 79,201
JADIZR010000018.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00047348-10-474410, whole genome shotgun sequence 46,621
JADIZR010000019.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00077199-10-151440, whole genome shotgun sequence 14,937
JADIZR010000020.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00094478-10-172630, whole genome shotgun sequence 17,263
JADIZR010000021.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig00094690-10-108390, whole genome shotgun sequence 10,163
JADIZR010000022.1 MAG: Proteobacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.245 tig01688790-10-2504050, whole genome shotgun sequence 250,119

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory